1. 11/1/2009 Biology 11.1 Gene Technology Gene Technology

2. 11/1/2009 Genetic Engineering  In 1973, Stanley Cohen and Herbert Boyer conducted an experiment that revolutionized genetic studies in biology.  They isolated the gene that codes for ribosomal RNA from the DNA of an African clawed frog and than inserted it into the DNA of E. Coli bacteria.  During transcription, the bacteria produced frog rRNA, thereby becoming the first genetically altered organisms.

3. 11/1/2009 Genetic Engineering  The process of manipulating genes for practical purposes is called genetic engineering.  Genetic engineering may involve building recombinant DNA; DNA made from two or more different organisms.

4. 11/1/2009 Genetic Engineering  The basic steps in genetic engineering can be explored by examining how the human gene for insulin is transferred into bacteria.  Insulin is a protein hormone that controls sugar metabolism.  Diabetics cannot produce enough insulin, so they must take doses of insulin regularly.

5. 11/1/2009 Genetic Engineering  Before genetic engineering, insulin was extracted from the pancreases of slaughtered cows and pigs and than purified.  Today, the human insulin gene is transferred to bacteria through genetic engineering.  Because the code is universal, bacteria can transcribe and translate a human insulin gene using the same code a human cell uses in order to produce human insulin.

6. 11/1/2009 Genetic Engineering  G enetic engineering experiments use different approaches, but most share 4 basic steps.  Step 1: DNA is cut  Step 2: Recombinant DNA is produced  Step 3: The gene is cloned when bacteria are allowed to reproduce  Step 4: cells undergo selection and than are screened.  Lets look at each of these steps in more detail to follow the process.

7. 11/1/2009 Genetic Engineering  Step 1 : Cutting DNA:  The DNA from the organism containing the gene of interest (in our example the insulin gene) is cut by restrictive enzymes.  Restrictive enzymes are bacterial enzymes that recognize and bind to specific short sequences of DNA, and than cut the DNA between specific nucleotides.

8. 11/1/2009 Genetic Engineering  Step 1 : Cutting DNA:  The DNA from a vector is also cut. A vector is an agent that is used to carry the gene of interest into another cell. Commonly used vectors include viruses, yeast, and plasmids.  Plasmids are circular DNA molecules that can replicate independently of the main chromosomes of the bacteria.

9. 11/1/2009 Genetic Engineering  Step 2: Making R ecombinant DNA — The DNA fragments from the organism containing the gene of interest are combined with the DNA fragments from the vectors. — An enzyme called DNA ligase is added to help bond the ends of DNA fragments together. — In our example, the DNA fragments are combined with plasmid DNA fragments. We develop a hybrid plasmid made of both parts. — The host cells than take up the recombinant DNA, this plasmid hybrid.

10. 11/1/2009 Genetic Engineering  Step 3: Cloning  In a process called gene cloning, many copies of the gene of interest are made each time the host cell reproduces.  Remember that bacteria reproduce by fission, producing identical offspring.  When a bacterial cell replicates it’s DNA, it’s plasmid DNA is also replicated.

11. 11/1/2009 Genetic Engineering  Step 4: Screening  Cells that have received the particular gene of interest are separated from cells that did not take up the vector with the gene of interest.  These cells can transcribe and translate the gene of interest to make the protein coded for in the gene.

12. 11/1/2009 Cutting DNA and Making Recombinant DNA  An example of how restriction enzymes work is shown at right.  The enzyme recognizes a specific sequence of DNA.  The sequence the enzyme recognizes and the sequence on the complementary DNA strand are palindromes (they read the same forward as backward like “noon “or “ufo tofu”)  The cuts of most restrictive enzymes produce pieces of DNA with short single strands on each end that are complementary to each other.  The ends are called “sticky ends”

13. 11/1/2009 Cutting DNA and Making Recombinant DNA  The vectors that are used contain only one nucleotide sequence that the restriction enzyme recognizes.  Thus, vectors such as the circular plasmas “open up” with the same sticky ends as those of the cut human DNA.  The two DNA molecules bond together by means of the complementary base pairing at the sticky ends.  The plasmid DNA has both the gene for plasmid DNA replication and the gene that makes the cell carrying the plasmid resistant to the antibiotic tetracycline.

14. 11/1/2009 Cutting DNA and Making Recombinant DNA  Cloning, selecting and screening cells:  One difficult part in a genetic experiment is finding and isolating the cells that contain the “gene of interest”.  First, all the cells that have taken up the plasmid must be identified.  The bacterial cells that have taken up the plasmid are identified by growing the bacteria on plates that contain the antibiotic tetracycline.

15. 11/1/2009 Cutting DNA and Making Recombinant DNA  Cloning, selecting and screening cells:  Only the cells which have taken up the vectors (which contain the gene for tetracycline resistance) survive when exposed to the tetracycline.  Each surviving cell makes a copy of the vector each time the cell reproduces.  Eventually, each surviving cell forms a colony of genetically identical cells, or clones.  Some vectors contain the gene of interest and some do not.

16. 11/1/2009 Cutting DNA and Making Recombinant DNA  Confirmation of a Cloned Gene  The surviving bacterial colonies are tested for the presence of the gene of interest.  One method used to identify a specific gene of interest is a technique called the Southern Blot

17. 11/1/2009 Cutting DNA and Making Recombinant DNA  Confirmation of a Cloned Gene — Step 1: In a southern blot, the DNA from each bacterial clone colony is isolated and cut into fragments by restriction enzymes. — The DNA fragments are separated by gel electrophoresis, a technique that uses an electric field within a gel to separate molecules by their size.

18. 11/1/2009 Cutting DNA and Making Recombinant DNA  Confirmation of a Cloned Gene — Step 1: (cont) — The gel is a rectangular slab of gelatin with a line of little rectangular wells near the top. — The DNA sample is placed in the pits. Because DNA is negatively charged it migrates toward the positive pole when the electric field is applied.

19. 11/1/2009 Cutting DNA and Making Recombinant DNA  Step 2: — The DNA fragments are separated by gel electrophoresis, a technique that uses an electric field within a gel to separate molecules by their size. — The gel is a rectangular slab of gelatin with a line of little rectangular wells near the top. — The DNA sample is placed in the pits. Because DNA is negatively charged it migrates toward the positive pole when the electric field is applied.

20. 11/1/2009 Cutting DNA and Making Recombinant DNA  Step 2: (cont) — The DNA fragments move through the gel, with the smallest DNA fragments moving fastest. — A pattern of bands is formed. The gel is soaked in a chemical solution that separates the double strands in each DNA fragment into single-stranded fragments.

21. 11/1/2009 Cutting DNA and Making Recombinant DNA  Step 3:  The DNA bands are than transferred directly onto a piece of filter paper (blotted).  The filter paper is moistened with a probe solution. Probes are radioactive or fluorescent labeled RNA or single-stranded DNA pieces that are complementary to the gene of interest.

22. 11/1/2009 Cutting DNA and Making Recombinant DNA  Confirmation of a Cloned Gene  Step 4:  Only the DNA fragments complementary to the probe will bind with the probe and form visible bands.

23. 11/1/2009 Cutting DNA and Making Recombinant DNA  Confirmation of a Cloned Gene  Once the bacterial colonies containing the gene of interest are identified, the researcher can manipulate the genetically engineered bacteria in many different ways.  For example, the gene of interest can be isolated so that the researcher can have pure DNA to use for studies.  The researcher can than study how the gene is controlled. Pure DNA allows the researcher to determine the sequence of nucleotides that make up the gene.

24. 11/1/2009 Cutting DNA and Making Recombinant DNA  Confirmation of a Cloned Gene  By comparing the nucleotide sequences of several different organisms, researchers can study the evolution of a particular gene.  The gene of interest can be isolated and transferred to other organisms.  The bacterial colonies can be used to produce large quantities of the protein coded for by the gene so that the protein can be studied further or used to make drugs, such as insulin.

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