Ch2. Genome Organization and Evolution 阮雪芬 Nov14, 2002 NTUST.

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Ch2. Genome Organization and Evolution 阮雪芬 Nov14, 2002 NTUST

Genomics and Proteomics DNA mRNA Proteins Cell functions Genome “ Genomics ” Proteome “ Proteomics ”

DNA 和蛋白質合成的地方 DNA Proteins Sugar Chain

Genome Gene + Chromosome Genome

Genes

Genome Sizes

Genetic Material A nucleotide contains : –A five-carbon sugar molecules –One or more phosphate groups –A nitrogenous base

Ribose and Deoxyribose

Backbone of DNA and RNA

Purines and Pyrimidines

The Double Helix

Exon and Intron in Eukaryotes

RNA Template-directed Polypeptide Synthesis Links the RNA and Protein Worlds (I) I

RNA Template-directed Polypeptide Synthesis Links the RNA and Protein Worlds (II) II III

Regulatory Mechanisms Organized the Expression of Genes Gene may be turned on or off in response to –concentrations of nutrients – stress – unfold complex programs of development during the lifetime of the organism.

In animals Methylation ( 甲基化 ) of DNA provides the signals for tissue-specific expression of developmentally regulated genes Products of certain genes cause cells to commit suicide ---Apoptosis ( 細胞自然死亡 )

Proteins Post-translational modification include –Addition of ligands –Methylation –Excision of peptides

Proteome and Proteomics Protein +Genome  Proteome Proteome  Proteomics

How Proteomics Can Help Drug Development

Definitions of Proteomics First coined in 1995 Be defined as the large-scale characterization of the entire protein complement of a cell line, tissue, or organism. Goal: -To obtain a more global and integrated view of biology by studying all the proteins of a cell rather than each one individually.

Proteomics Origins In 1975, the introduction of the 2D gel by O’Farrell who began mapping proteins from E. coli. The first major technology to emerge for the identification of proteins was the sequencing of proteins by Edman degradation  picomole MS technology has replaced Edman degradation to identify proteins  femtomole

Types of Proteomics and Their Applications to Biology

Two-dimensional Polyacrylamide Gel Electrophoresis (2D PAGE) Nature 2000, 405,

Mass-spectroscopic Techniques Current Opinion in Chemical Biology 2000, 4:489–494 Mass Fingerprint Searching in ych/tools/peptide nt.html

Protein Array Detection of specific antibody–antigen interactions on the hEx1 cDNA array.