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Iodine: Many Electrons and Much to Discuss… The Nuclear Quadrupole Coupling, Nuclear Spin-Rotation, Conformational Analysis, and Structural Determination.

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Presentation on theme: "Iodine: Many Electrons and Much to Discuss… The Nuclear Quadrupole Coupling, Nuclear Spin-Rotation, Conformational Analysis, and Structural Determination."— Presentation transcript:

1 Iodine: Many Electrons and Much to Discuss… The Nuclear Quadrupole Coupling, Nuclear Spin-Rotation, Conformational Analysis, and Structural Determination of 2-Iodobutane Eric A. Arsenault, Daniel A. Obenchain, Yoon Jeong Choi, Thomas A. Blake, Stephen A. Cooke, and Stewart E. Novick,

2 2-iodobutane gauche’ (g’) anti (a) gauche (g)

3 Spectroscopic Parameters of a-, g-, and g’-2-iodobutane
A (MHz) (8)a (11) (7) B (MHz) (18) (12) (26) C (MHz) (11) (7) (38) DJ (kHz) 0.0908(16) 0.3488(14) 0.3546(29) DJK (kHz) -0.618(18) DK (kHz) -6.12(25) 1.043(7) 4.54(7) d1 (kHz) (11) (10) -0.088(4) d2 (kHz) (35) χ aa (MHz) (13) (2) (6) χ bb (MHz) (12) (14) (11) χ cc (MHz) (17) (14) (12) χ ab b (MHz) (35) (20) (4) χ ac (MHz) (28) (5) (6) χ bc (MHz) -92.25(7) (32) (4) Caa (kHz) 4.0(7) 2.85(11) 2.7(5) Cbb (kHz) 3.74(22) 4.69(12) 4.18(30) Ccc (kHz) 4.47(24) 3.65(7) 3.52(27) Nlinesc 102 212 72 RMSd (kHz) 3.8 2.7 3.0 aNumbers in parentheses give standard errors (1𝜎, 67% confidence level) in units of the least significant figure. bThe signs of the off-diagonal quadrupole coupling constants can not be exactly determined. It is only known that χ ab χ a𝑐 χ bc is negative1. These terms are presented with signs in accordance with the ab initio results. cNumber of transitions used in the fit. dRoot mean square deviation of the fit, obs−calc 2 / N lines 1Spoerel, U.; Dreizler, H.; Stahl, W. Zeitschrift fur Naturforschung A 1994, 49,

4 Nuclear Quadrupole Coupling Tensor of Iodine in a-, g-, and g’-2-iodobutane
Parameters a g g’ χ zz (MHz) (21)a (23) (4) χ y𝑦 (MHz) (18) (20) 862.95(4) χ xx (MHz) (20) (28) 867.14(5) 𝜂 χ b (16) (20) (4) aNumbers in parentheses give standard errors (1𝜎, 67% confidence level) in units of the least significant figure. b is a measure of the asymmetry of the nuclear quadrupole coupling tensor, where 𝜂 𝜒 = 𝜒 𝑥𝑥 − 𝜒 𝑦𝑦 𝜒 𝑧𝑧 g’ a g

5 13C Isotopologues of g-2-iodobutane
Cavity Spectra Chirp Spectra

6 Spectroscopic Parameters of g-2-iodobutane
Prediction g-Parent 13C1 13C2 13C3 13C4 A (MHz) 3612 (11)a (26) (30) (8) (8) B (MHz) 1645 (12) (9) (12) (18) (14) C (MHz) 1189 (7) (9) (13) (20) (14) DJ (kHz) 0.3488(14) 0.3386(15) 0.3441(20) 0.3385(32) 0.3478(24) DK (kHz) 1.043(7) [1.043] d1 (kHz) (10) [ ] d2 (kHz) (35) [ ] χ aa (MHz) -684 (2) (13) (6) (23) (17) χ bb (MHz) 272 (14) (14) (11) (27) (20) χ cc (MHz) 411 (14) (19) (13) (36) (27) χ ab b (MHz) -441 (20) (13) (12) (33) (20) χ ac (MHz) -212 (5) (31) (31) -461.4(7) 451.6(5) χ bc (MHz) -85 (32) (30) (17) (44) (28) Caa (kHz) 2.85(11) [2.85] Cbb (kHz) 4.69(12) [4.69] Ccc (kHz) 3.65(7) [3.65] Nlinesc 212 39 58 38 40 RMS d (kHz) 2.7 0.8 1.7 1.6 1.2 aNumbers in parentheses give standard errors (1𝜎, 67% confidence level) in units of the least significant figure. bThe signs of the off-diagonal quadrupole coupling constants can not be exactly determined. It is only known that χ ab χ a𝑐 χ bc is negative. These terms are presented with signs in accordance with the ab initio results. cNumber of transitions used in the fit. dRoot mean square deviation of the fit, obs−calc 2 / N lines 1Spoerel, U.; Dreizler, H.; Stahl, W. Zeitschrift fur Naturforschung A 1994, 49,

7 r0 Structural Parameters for g-2-iodobutane
Bond Length (Å) C1-C2 1.536(12)a C2-C3 1.497(6) C3-C4 1.548(6) I-C2 2.166(4) Bond Angle (°) ∠(C1-C2-C3) 112.9(10) ∠(C2-C3-C4) 114.17(23) Dihedral (°) (C1-C2-C3-C4) 172.7(16) (I-C2-C3-C4) -63.85(31) Structural Fit Error χ 2 0.0024 𝜎 0.018 aNumbers in parentheses give standard errors (1𝜎, 67% confidence level) in units of the least significant figure.

8 Kraitchman Coordinates for g-2-iodobutane
Atoms Kraitchman Coordinates ab initio Coordinates |a| |b| |c| a b c C1 1.2170(12)a 2.1389(7) 0.05(29)i 1.2 2.2 -0.023 C2 1.1801(13) 0.6646(23) 0.370(4) 0.67 0.37 C3 2.2422(7) 0.132(11) 0.354(4) 2.3 -0.15 -0.36 C4 2.3616(6) 1.6019(9) 0.113(13) 2.4 -1.6 0.13 aNumbers in parentheses give standard errors (1, 67% confidence level) in units of the least signifigant figure. 𝛼 2 = Δ 𝑃 𝛼 𝜇 1+ Δ𝑃 𝛽 𝐼 𝛼 − 𝐼 𝛽 Δ𝑃 𝛾 𝐼 𝛼 − 𝐼 𝛾 Δ 𝑃 𝛼 = 1 2 (− Δ𝐼 𝛼 + Δ𝐼 𝛽 + Δ𝐼 𝛾 ) Δ𝐼 𝛼 = 𝐼′ 𝛼 − 𝐼 𝛼

9 Spectroscopic Parameters of g-2-iodobutane
Prediction g-Parent 13C1 13C2 13C3 13C4 A (MHz) 3612 (11)a (26) (30) (8) (8) B (MHz) 1645 (12) (9) (12) (18) (14) C (MHz) 1189 (7) (9) (13) (20) (14) DJ (kHz) 0.3488(14) 0.3386(15) 0.3441(20) 0.3385(32) 0.3478(24) DK (kHz) 1.043(7) [1.043] d1 (kHz) (10) [ ] d2 (kHz) (35) [ ] χ aa (MHz) -684 (2) (13) (6) (23) (17) χ bb (MHz) 272 (14) (14) (11) (27) (20) χ cc (MHz) 411 (14) (19) (13) (36) (27) χ ab b (MHz) -441 (20) (13) (12) (33) (20) χ ac (MHz) -212 (5) (31) (31) -461.4(7) 451.6(5) χ bc (MHz) -85 (32) (30) (17) (44) (28) Caa (kHz) 2.85(11) [2.85] Cbb (kHz) 4.69(12) [4.69] Ccc (kHz) 3.65(7) [3.65] Nlinesc 212 39 58 38 40 RMS d (kHz) 2.7 0.8 1.7 1.6 1.2 aNumbers in parentheses give standard errors (1𝜎, 67% confidence level) in units of the least significant figure. bThe signs of the off-diagonal quadrupole coupling constants can not be exactly determined. It is only known that χ ab χ a𝑐 χ bc is negative. These terms are presented with signs in accordance with the ab initio results. cNumber of transitions used in the fit. dRoot mean square deviation of the fit, obs−calc 2 / N lines 1Spoerel, U.; Dreizler, H.; Stahl, W. Zeitschrift fur Naturforschung A 1994, 49,

10 NQC Tensor of Iodine in g-2-iodobutane
Parameters g-Parent 13C1 13C2 13C3 13C4 χ zz (MHz) (23) (14) (13) (34) (23) χ y𝑦 (MHz) (20) 888.34(8) 888.61(9) 888.60(24) 888.51(16) χ xx (MHz) (28) 842.88(14) 842.89(14) 842.63(35) 842.74(25) 𝜂 χ b (20) (9) (10) (25) (17) aNumbers in parentheses give standard errors (1𝜎, 67% confidence level) in units of the least significant figure. b is a measure of the asymmetry of the nuclear quadrupole coupling tensor, where 𝜂 𝜒 = 𝜒 𝑥𝑥 − 𝜒 𝑦𝑦 𝜒 𝑧𝑧

11 What is causing this difference?
Missing term in Hamiltonian of 13C isotopologue? Additional nuclear spin rotation interaction due to 𝜇𝐼 of 13C 1.) Not necessary in any other 13C isotopologue 2.) Term did not fit Spin-spin interaction between 127I (𝐼=5/2) and 13C (𝐼=1/2) 1.) Term only on the order of 2 kHz 2.) Term did not fit well 3.) Did not change value of χ zz Change in C-I bond length upon isotopic substitution

12 What is causing this difference
What is causing this difference? Change in C-I bond length upon isotopic substitution. Bond length was scaled using ab initio frequency of the normal mode that most resembled a C-I stretch and the reduced mass of 12C-127I and 13C-127I Found a decrease in bond length of 1.8 mÅ Scaled 13C-127I bond length was used in ab initio to predict change in NQC tensor Suggests a 230 kHz decrease in χ zz for 13C2 Experimentally observed decrease in χ zz was 199(13) kHz Predictions of 𝛘 Based on Initial Structure From 13C2 bond length correction χ zz (MHz) χ y𝑦 (MHz) χ xx (MHz)

13 Acknowledgements


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