X-rays are electromagnetic waves (like light) and have a wavelength about the size of atoms. From https://askabiologist.asu.edu/quick-class-x-ray-crystallography.

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Presentation transcript:

X-rays are electromagnetic waves (like light) and have a wavelength about the size of atoms. From

X-rays X rays are electromagnetic radiation ranging in wavelength from about 100 A to 0.01 Å (1 Å is equivalent to about cm (about 4 billionths of an inch). The shorter the wavelength of the X ray, the greater is its energy and its penetrating power. A mixture of many different wavelengths is known as “white” X rays, as opposed to “monochromatic” X rays, which represent only a single wavelength. Wilhelm Conrad Röntgen, The hand of Albert von Kolliker, Introduced many microscopic mechniques to advance Histology.

Generation of X-rays in the laboratory Element K  wavelength Mo Cu Co Fe Cr2.2909

Rotating anode Rotating anode generator

Simplified phase diagram for crystallization

Different techniques traverse the crystallization space differently.

0.9 Å 1.4 Å Beam stop shadow Diffracts to beyond 0.85 Å. In this image ~5000 data points alone are visible. The total data set at this resolution has over 1 million data points.

Fo-Fc 2  Fo-Fc 3  Fo-Fc 4  Fo-Fc 5  2Fo-Fc 1.0 

The first synchrotron discovered, the Crab Nebula (about 6500 light years away) For more signal, need more intensity

A synchrotron accelerates and stores particles (electrons or protons) moving at speeds close to that of light. As the particles loose energy they give of electromagnetic radiation. The particles are steered by magnetic fields. Electromagnetic radiation (photons) is not affected by these fields and is emitted at the tangent to the change in direction. Insertion devices (undulators and wigglers) ‘amplify’ this radiation

Synchrotron radiation is 10 9 times More brilliant than the sun and about 100 million miles closer

Linear accelerator Booster Ring SynchrotronSynchrotron BeamlineBeamline

Where? JAERI ILL CHESS SNS NSLS APS SSRL Synchrotron X-ray sources we are actively usingNeutron sources we are actively using

A candle provides light

More candles provide more light “Evolutionary technology” Massimo Catarinella

A light bulb also provides light. It changed the way we do things But it is an example of revolutionary technology

Synchrotron radiation is 10 9 times More brilliant than the sun and about 100 million miles closer We are here now!

X-ray Free Electron Lasers (XFEL’s) are revolutionary sources of X-ray radiation They are changing the way and the kind of X- ray based science we can do The Linear Coherent Light Source XFEL Photo courtesy of SLAC National Accelerator Laboratory

Moving electrons can emit X-rays through several processes, in our case the emission (synchrotron radiation) is caused by changing direction due to a magnetic field The force felt by a charged particle (an electron in this case) in a magnetic field is perpendicular to the direction of the field and to the direction of the particle's velocity. The net effect of this is to cause the particle to spiral around the direction of the field. Since circular motion represents acceleration (i.e., a change in velocity), electrons radiate photons (which include X-rays) of a characteristic energy, corresponding to the radius of the circle Image from NASA

The first part of an XFEL, the injector, is used to generate electrons In the LCLS case (an XFEL at Stanford) the injector cathode is a highly polished copper plate. A short burst of light from a drive laser hits the cathode's shiny surface and produces one electron for every 100,000 photons (image from of LCLS)

Injector } Not exact to scale

The electrons are accelerated by a radio frequency accelerator (a radio station!) ESRF

Injector Accelerator } Not exact to scale

They are steered by magnets

Injector Accelerator Steering Not exact to scale

The accelerated electrons run through undulators And go through an undulater, a series of alternating pole magnets Image by Greg Stewart, SLAC

LCLS

Injector Accelerator Steering Undulator } Not exact to scale

Relativistic effects combine to produce bunches of correlated electrons

This results in intense but short pulses of X-rays -2 fs2 fs5 fs 10 fs20 fs50 fs Neutze et al 2000One fs is s

/exceptional-problems-demand- exceptional-computers / X-ray lasers open up