Role of IT in Bioinformatics Naveena.Y. What is bioinformatics ? Study of Information content and information flow in biological systems and processes.

Slides:



Advertisements
Similar presentations
Martin John Bishop UK HGMP Resource Centre Hinxton Cambridge CB10 1 SB
Advertisements

The design, construction and use of software tools to generate, store, annotate, access and analyse data and information relating to Molecular Biology.
Bioinformatics What is bioinformatics? Why bioinformatics? The major molecular biology facts Brief history of bioinformatics Typical problems of bioinformatics:
The Golden Age of Biology DNA -> RNA -> Proteins -> Metabolites Genomics Technologies MECHANISMS OF LIFE Health Care Diagnostics Medicines Animal Products.
One of many views of the cell. One of many views of the DNA.
Computational Molecular Biology (Spring’03) Chitta Baral Professor of Computer Science & Engg.
Bioinformatics: a Multidisciplinary Challenge Ron Y. Pinter Dept. of Computer Science Technion March 12, 2003.
JYC: CSM17 BioinformaticsCSM17 Week1:What is Bioinformatics? A Multidisciplinary Subject incorporating: Biology –the study of living systems Informatics.
Introduction to Genomics, Bioinformatics & Proteomics Brian Rybarczyk, PhD PMABS Department of Biology University of North Carolina Chapel Hill.
The Cell, Central Dogma and Human Genome Project.
Biological Databases Chi-Cheng Lin, Ph.D. Associate Professor Department of Computer Science Winona State University – Rochester Center
Scientific Data Mining: Emerging Developments and Challenges F. Seillier-Moiseiwitsch Bioinformatics Research Center Department of Mathematics and Statistics.
Bioinformatics Student host Chris Johnston Speaker Dr Kate McCain.
Bioinformatics Original definition (1979 by Paulien Hogeweg): “application of information technology and computer science to the field of molecular biology”
A Brief History of Biotechnology and its Uses in Industry.
CELL Building blocks of life Chemical system able to maintain its structure and reproduce Cells  tissues  organs  Organism PROKARYOTES Primitive organisms.
An Introduction to Bioinformatics Molecular Biology Databases.
The many roles of RNA Fran Lewitter Head of Biocomputing Whitehead Institute.
Overview of Bioinformatics A/P Shoba Ranganathan Justin Choo National University of Singapore A Tutorial on Bioinformatics.
Using DNA Subway in the Classroom Red Line Lesson Sketch.
Introduction to RNA Bioinformatics Craig L. Zirbel October 5, 2010 Based on a talk originally given by Anton Petrov.
Bioinformatics.
Chapter 13.2 (Pgs ): Ribosomes and Protein Synthesis
Using DNA Subway in the Classroom Red Line Lesson Sketch.
Chapter 13.2 Ribosomes and Protein Synthesis
Genome Organization and Evolution. Assignment For 2/24/04 Read: Lesk, Chapter 2 Exercises 2.1, 2.5, 2.7, p 110 Problem 2.2, p 112 Weblems 2.4, 2.7, pp.
Copyright © 2009 Pearson Education, Inc. Art and Photos in PowerPoint ® Concepts of Genetics Ninth Edition Klug, Cummings, Spencer, Palladino Chapter 21.
Molecular Biology Primer. Starting 19 th century… Cellular biology: Cell as a fundamental building block 1850s+: ``DNA’’ was discovered by Friedrich Miescher.
Bioinformatics Why Can’t It Tell Us Everything?. Bioinformatics What are our Data Sets? Interested in information flow with cells Currently, the key information.
Blueprint of Life Based on Chapter 1 of Post-genome Informatics by Minoru Kanehisa, Oxford University Press, 2000.
Organizing information in the post-genomic era The rise of bioinformatics.
Copyright © 2009 Pearson Education, Inc. Genomics, Bioinformatics, and Proteomics Chapter 21 Lecture Concepts of Genetics Tenth Edition.
Do you know… What does the central dogma of modern biology say? What are the two main steps in Protein Synthesis?
MCB 720: Molecular Biology Biotechnology terminology Common hosts in biotechnology research Transcription & Translation Prokaryotic gene organization &
Ilium kidney Skin Brain Muscle etc…
Introduction to Bioinformatics Dr. Rybarczyk, PhD University of North Carolina-Chapel Hill
Proteomics Session 1 Introduction. Some basic concepts in biology and biochemistry.
Central dogma: the story of life RNA DNA Protein.
EB3233 Bioinformatics Introduction to Bioinformatics.
Jobs, Careers, Internships, Senior Projects and Research Computer Application Development K-12 education Industrial Training Bioinformatics Validation.
Mitcon Biopharma Chaitanya Velhal. What is BIOINFORMATICS All aspects of gathering, storing, handling, analyzing, interpreting and spreading vast amounts.
Bioinformatics and Computational Biology
Department of Biotechnology
Bioinformatics Project BB201 Metabolism A.Nasser
1 Rong-I Hong, D.Phil. An Overview for Bioinformatics Rong-I Hong, D.Phil. Biomedical Engineering Center Industrial Technology Research Institute
Ribosomes and Protein Synthesis. Learning Objectives  Identify the genetic code and explain how it is read.  Summarize the process of translation. 
THE CONCEPT OF THE GENOME AS THE COMPLETE SET OF GENES IN A CELL AND OF THE PROTEOME AS THE FULL RANGE OF PROTEINS THAT A CELL IS ABLE TO PRODUCE. THE.
Information retrieval and sliding window programs April 5, 2011 Hand in Homework #1. Homework #2 due Tuesday, April 12. Learning objectives- Understand.
Notes: Human Genome (Right side page)
Using DNA Subway in the Classroom Genome Annotation: Red Line.
DNA, RNA, & Protein Synthesis (12.3) State Standards 2A. Distinguish between DNA and RNA. 2B. Explain the role of DNA in storing and transmitting cellular.
BME435 BIOINFORMATICS.
Bioinformatics Overview
Genomics A Systematic Study of the Locations, Functions and Interactions of Many Genes at Once.
Protein engineering and recombinant protein expression
생물정보학 Bioinformatics.
סמים וסינפסות.
Blueprint of Life Based on Chapter 1 of Post-genome Informatics by Minoru Kanehisa, Oxford University Press, 2000.
Mangaldai College, Mangaldai
Genomes and Their Evolution
Protein Synthesis A brief overview Purpose? Key Players?
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
Biotechnology and Genetic Engineering PBIO 450/550
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
Lesson 1: Evolution.
How are proteins made. (Ch 17) How is Gene Expression Controlled
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
Presentation transcript:

Role of IT in Bioinformatics Naveena.Y

What is bioinformatics ? Study of Information content and information flow in biological systems and processes Definition varies depending upon the domain of person who is giving the definition

What was the reason behind the emergence of a separate domain, bioinformatics ?

Brief History Insulin – 1956 Yeast trna – 1960’s PDB – 1972 Swissprot – 1986 Human Genome Initiated – 1988 Completed – 26 th Jun 2000

Where does the data come from? Wet Lab Research Database 1 Ex : Genbank Database 2 Ex : Swissprot Database 3 Ex : Interpro Publish Primary Secondary Composite

Central Dogma of Life

What is their in each of this? DNA – A,C,T,G RNA – A,C,U,G Protein – AUGACGAGAAGGAGUAGAAGUAG MV Codon Table

Protein Structure Primary Secondary Teritary Quarternary

IT is used in different areas Functional Genomics Proteomics Drug Discovery Plant Biotechnology Molecular Modeling

Challenges Protein Structure Prediction RNA Structure Preditction Drug Discovery Pharmacogenomics

Questions ?