Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes.

Slides:



Advertisements
Similar presentations
The Build-up of the Red Sequence at z
Advertisements

Chromosome Disorders. Classification of genetic disorders  Single-gene disorders (2%)  Chromosome disorders (
High Throughput Sequencing
Bioinformatics. What I learned this week DNA is the blueprint of life. The human body has 3.2 billion base pairs of DNA, 23 chromosome pairs, and 25,000.
GEPAS -Gene Expression Pattern Analysis Suite Hongli Li Computer Science Department UMASS Lowell
Introduction to Evolutionary Computation  Genetic algorithms are inspired by the biological processes of reproduction and natural selection. Natural selection.
Genome Browsing with the UCSC Genome Browser
Selection Sort
Genetic Mutations. Mutations What is a genetic mutation? A change in the genetic code Genetic mutations may have no effect, a beneficial effect, or a.
Read, Read, Read, Read, Read!! The following presentation is a review over important computer terms. They are important for you to recognize and understand.
1 Welcome to the GrameneMart Tutorial A tool for batch data sequence retrieval 1.Select a Gramene dataset to search against. 2.Add filters to the dataset.
computer
® Microsoft Office 2010 Access Tutorial 3 Maintaining and Querying a Database.
Computer Applications II Mrs. Stern.  A database is a collection of information that is organized so that it can easily be accessed, managed, and updated.
The Smarter Balanced Assessment Consortium Finding Resources in the Digital Library June, 2014.
Topic 3 Genetics 3.1 Genes.
® Microsoft Office 2013 Access Maintaining and Querying a Database.
Chapter 9 The Microsoft Access 2007 Window © 2007 Lawrenceville Press Slide 1.
Selection Sort
Chapter 6 PART II: Concepts in Molecular Biology and Genetics The Human Genome: Implications for the Understanding of Human Disease Companion site for.
A New Strategy of Protein Identification in Proteomics Xinmin Yin CS Dept. Ball State Univ.
Analyzing digital gene expression data in Galaxy Supervisors: Peter-Bram A.C. ’t Hoen Kostas Karasavvas Students: Ilya Kurochkin Ivan Rusinov.
Using the family tree below, answer the questions on your worksheet
Determine the sequence of genes along a chromosome based on the following recombination frequencies A-C 20% A-D 10% B-C 15% B-D 5%
Genetic Diversity of Offspring Genes have a better chance of survival if they are rearranged at each generation Only offspring that are not diverse are.
40 Minutes Left.
Genetic Search Algorithms Matt Herbster. Why Another Search?  Designed in the 1950s, heavily implemented under John Holland (1970s)  Genetic search.
Slide 1 of 24 Copyright Pearson Prentice Hall Biology.
COURSE OF BIOINFORMATICS Exam_30/01/2014 A.
Data Loading into Ensembl Database TGAC Browser
Human features are those things created by man.
TRUE OR FALSE QUIZ. A gene is a length of DNA. TRUE or FALSE.
Biological Databases By: Komal Arora.
Access Maintaining and Querying a Database
High-Throughput Analysis of Genomic Data [S7] ENRIQUE BLANCO
continued on next slide
Presentation Test. Second Slide Third Slide It worked.
Pick a Gene Assignment 4 Requirements
                                                                                                                                                                                                                                                
MUTATIONS.
continued on next slide
continued on next slide
How our genes are organized
Large Scale Annotation of Genomic Datasets with Genephony
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
MS Access: Creating & Using Forms
Applications of Cellular Neural Networks to Image Understanding
Searching the NCBI Databases
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
KEY CONCEPT A ___________ of ______ is used to study _____ ________.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
____ ____ of each ________ ____ affect ___________.
Adaboost for faces. Material
60 MINUTES REMAINING.
Assessing changes in data – Part 2, Differential Expression with DESeq2
MUTATIONS.
Sponge Explain the process of mitosis in your own words.
DNA & Chromosome Notes.
MUTATIONS.
АВЛИГАТАЙ ТЭМЦЭХ ҮНДЭСНИЙ ХӨТӨЛБӨР /танилцуулга/
Gene Safari (Biological Databases)
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
7th Grade Computers.
COMPUTER HISTORY, PRESENT & FUTURE. What is a Computer? A computer is a machine that can be instructed to carry out sequences of arithmetic or logical.
continued on next slide
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
RANDOM NUMBERS SET # 1:
continued on next slide
Presentation transcript:

Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes

Biological Databases [S2] - ENRIQUE BLANCO COMPUTER ANALYSIS >sequence TACGTACGTAGCTAGCTAGCTACGTAGCTAGCTA GCTACGTAGCTAATGTCGAAGTAACGTACGATCG TAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGA TGCATGCGCTAAACACATCGCTTTGGCACGAGCT AGCTAGCTACTACAGCACGGGGGCACGTAGTGCA GCTAGCAGCCGCCGCATCGCCCCCCGATCGATCG TAGCCGACGATCTACTACGTAGCGACTGACTGAT CGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCT AGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGC TAGCTACGAGCAGCTAGCTAGCTACGAC += GENE 1 FEATURE 1 FEATURE 2 … FEATURE m GENE 2 FEATURE 1 FEATURE 2 … FEATURE m GENE n FEATURE 1 FEATURE 2 … FEATURE m …

Biological Databases [S2] - ENRIQUE BLANCO ONE DATA SET GENE 1 FEATURE 1 FEATURE 2 … FEATURE m GENE 2 FEATURE 1 FEATURE 2 … FEATURE m GENE n FEATURE 1 FEATURE 2 … FEATURE m … SORT REARRANGE FEATURE m+1 ADD/CONVERT/EXTRACT FILTER

Biological Databases [S2] - ENRIQUE BLANCO TWO DATA SETS GENE 1 FEATURE 1 FEATURE 2 GENE 2 FEATURE 1 FEATURE 2 GENE m FEATURE 1 FEATURE 2 … GENE 1 GENE 2 GENE n … FEATURE 1 FEATURE 3 FEATURE 1 FEATURE 3 FEATURE 1 FEATURE 3

Biological Databases [S2] - ENRIQUE BLANCO PIPELINES/WORKFLOWS >chromosome1 TACGTACGTAGCTAGCTAGCTACGTAGCTAGCTA GCTACGTAGCTAATGTCGAAGTAACGTACGATCG TAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGA TGCATGCGCTAAACACATCGCTTTGGCACGAGCT AGCTAGCTACTACAGCACGGGGGCACGTAGTGCA GCTAGCAGCCGCCGCATCGCCCCCCGATCGATCG TAGCCGACGATCTACTACGTAGCGACTGACTGAT CGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCT AGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGC TAGCTACGAGCAGCTAGCTAGCTACGAC >chromosome22 TACGTACGTAGCTAGCTAGCTACGTAGCTAGCTA GCTACGTAGCTAATGTCGAAGTAACGTACGATCG TAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGA TGCATGCGCTAAACACATCGCTTTGGCACGAGCT AGCTAGCTACTACAGCACGGGGGCACGTAGTGCA GCTAGCAGCCGCCGCATCGCCCCCCGATCGATCG TAGCCGACGATCTACTACGTAGCGACTGACTGAT CGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCT AGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGC TAGCTACGAGCAGCTAGCTAGCTACGAC … >sequence TACGTACGTAGCTAGCTAGCTACGTAGCTAGCTA GCTACGTAGCTAATGTCGAAGTAACGTACGATCG TAGCTAGCTAGCTGATGCTATCGTAGCTAGCTGA TGCATGCGCTAAACACATCGCTTTGGCACGAGCT AGCTAGCTACTACAGCACGGGGGCACGTAGTGCA GCTAGCAGCCGCCGCATCGCCCCCCGATCGATCG TAGCCGACGATCTACTACGTAGCGACTGACTGAT CGATGAGGATCGTGAGCTAGCGTGCTAGCTAGCT AGCTAGCTAGCTAGCTAGCAGCTACGTACGTAGC TAGCTACGAGCAGCTAGCTAGCTACGAC +

Biological Databases [S2] - ENRIQUE BLANCO GALAXY

Biological Databases [S2] E NRIQUE B LANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes