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Searching the NCBI Databases

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Presentation on theme: "Searching the NCBI Databases"— Presentation transcript:

1 Searching the NCBI Databases

2 Search for CFTR[gene] in the Protein database
What is it?

3 Limit to genes in human only CFTR[gene] AND human[orgn]
How many?

4 Restrict to RefSeq How many?

5 RefSeq records can also be filtered using the Limits tab

6 Examine the NP_000483 record How many amino-acids are in the protein?
On which chromosome is this protein-coding gene located?

7 Follow the dbSNP link to examine the SNPs associated with this protein
How many SNPs?

8 Follow the dbSNP link to examine the SNPs associated with this protein
Describe mutation in first record. Is it synonymous?

9 Use the Taxonomy Browser to examine fully-sequenced primates genomes

10 Use the Taxonomy Browser to examine fully-sequenced prototheria genomes

11 Sequence Retrieval

12 Search for human BRCA1 in Protein database
Select longest isoform

13 Display the sequences in FASTA format

14 Save the sequence into a WORD file


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