LONI Pipeline Integration/ UNC shape analysis

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Presentation transcript:

LONI Pipeline Integration/ UNC shape analysis 2007 Project Half Week LONI Pipeline Integration/ UNC shape analysis Team Plan/Expected Challenges/Publication Algorithms, Software Development: Create a workflow in LONI pipeline that wraps around a new set of UNC shape analysis executables. Develop, provide interface for executing the workflow on the LONI grid. Continuation of last programming week. Discuss Slicer3 integration, eg: Pipeline v4 batch mode operation . Jagadeeswaran Rajendiran, UCLA (Core 2) (r.jagadeeswaran@loni.ucla.edu) Martin Styner, UNC (Algorithms) Steve Pieper, Isomics (Core 2) Software: computational speed. Intuitive user interface. Accomplished by end of Programming Week Clinical: Validation of results. Pipeline batch mode completed, workflows can be executed without GUI Capability to execute both locally (on your laptop) and on the grid completed Worked on client-server, testing for scalability in progress Worked with Martin, discussed possible enhancements to the data model Pipeline available for alpha-testing

LONI pipeline for UNC shape analysis: Developing LONI pipelines for UNC shape analysis ready for clinicians Team Plan/Expected Challenges/Publication Algorithms: create LONI pipeline modules and network for new set of shape analysis executables, as well as interface for running UNC shape analysis in LONI as simple as possible. Continuation of last programming week. Martin Styner, UNC Michael Pan, LONI Jagadeeswaran Rajendiran, LONI Software: Training, Extension of LONI software if needed. Clinical: Validation of results. Accomplished by end of Programming Week LONI pipeline for full processing created Bug fixing and considerable feature request issued Top-level view encapsulating details from users Nearly ready for Core 3 and training core Open Issues: Full encapsulation, job distribution, Visualization of Quality Control data and results, Validation of Results