Synthetic Gene Circuits Learn to Classify

Slides:



Advertisements
Similar presentations
Individualized Medicine from Prewomb to Tomb Eric J. Topol Cell Volume 157, Issue 1, Pages (March 2014) DOI: /j.cell Copyright.
Advertisements

What We Talk About When We Talk About Fat Evan D. Rosen, Bruce M. Spiegelman Cell Volume 156, Issue 1, Pages (January 2014) DOI: /j.cell
Mitoconfusion: Noncanonical Functioning of Dynamism Factors in Static Mitochondria of the Heart Moshi Song, Gerald W. Dorn Cell Metabolism Volume 21, Issue.
Origins of Metastatic Traits Sakari Vanharanta, Joan Massagué Cancer Cell Volume 24, Issue 4, Pages (October 2013) DOI: /j.ccr
Maintaining Cell Identity through Global Control of Genomic Organization Gioacchino Natoli Immunity Volume 33, Issue 1, Pages (July 2010) DOI: /j.immuni
Making Proteins in the Powerhouse B. Martin Hällberg, Nils-Göran Larsson Cell Metabolism Volume 20, Issue 2, Pages (August 2014) DOI: /j.cmet
Transcriptional Control of Gene Expression by MicroRNAs Basel Khraiwesh, M. Asif Arif, Gotelinde I. Seumel, Stephan Ossowski, Detlef Weigel, Ralf Reski,
Transcription Factor Activity Mapping of a Tissue-Specific In Vivo Gene Regulatory Network Lesley T. MacNeil, Carles Pons, H. Efsun Arda, Gabrielle E.
Distribution of Human Embryonic Stem Cell Lines: Who, When, and Where Jennifer B. McCormick, Jason Owen-Smith, Christopher Thomas Scott Cell Stem Cell.
Tumor-Derived Jagged1 Promotes Osteolytic Bone Metastasis of Breast Cancer by Engaging Notch Signaling in Bone Cells Nilay Sethi, Xudong Dai, Christopher.
Eph-Ephrin Bidirectional Signaling in Physiology and Disease Elena B. Pasquale Cell Volume 133, Issue 1, Pages (April 2008) DOI: /j.cell
Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome Corinne Ferrier Maurice, Henry Joseph Haiser, Peter James Turnbaugh.
Cancer Metabolism Cell Volume 148, Issue 3, (February 2012) DOI: /j.cell Copyright © 2012 Terms and Conditions Terms and Conditions.
Neuronal Cell Types and Connectivity: Lessons from the Retina H. Sebastian Seung, Uygar Sümbül Neuron Volume 83, Issue 6, Pages (September 2014)
Evolution of the Cancer Stem Cell Model Antonija Kreso, John E. Dick Cell Stem Cell Volume 14, Issue 3, Pages (March 2014) DOI: /j.stem
Nuclear Receptors, RXR, and the Big Bang Ronald M. Evans, David J. Mangelsdorf Cell Volume 157, Issue 1, Pages (March 2014) DOI: /j.cell
ERBB Receptors: From Oncogene Discovery to Basic Science to Mechanism-Based Cancer Therapeutics Carlos L. Arteaga, Jeffrey A. Engelman Cancer Cell Volume.
Identification and characterization of leukemia stem cells in murine MLL-AF9 acute myeloid leukemia Tim C.P. Somervaille, Michael L. Cleary Cancer Cell.
The Landscape of Microsatellite Instability in Colorectal and Endometrial Cancer Genomes Tae-Min Kim, Peter W. Laird, Peter J. Park Cell Volume 155, Issue.
Module Map of Stem Cell Genes Guides Creation of Epithelial Cancer Stem Cells David J. Wong, Helen Liu, Todd W. Ridky, David Cassarino, Eran Segal, Howard.
IPSC Crowdsourcing: A Model for Obtaining Large Panels of Stem Cell Lines for Screening Mahendra Rao Cell Stem Cell Volume 13, Issue 4, Pages (October.
Human Brown Adipose Tissue Sven Enerbäck Cell Metabolism Volume 11, Issue 4, Pages (April 2010) DOI: /j.cmet Copyright © 2010.
The Metabolic Basis of Pulmonary Arterial Hypertension Gopinath Sutendra, Evangelos D. Michelakis Cell Metabolism Volume 19, Issue 4, Pages (April.
Synapse-Specific Adaptations to Inactivity in Hippocampal Circuits Achieve Homeostatic Gain Control while Dampening Network Reverberation Jimok Kim, Richard.
P120-Catenin Mediates Inflammatory Responses in the Skin Mirna Perez-Moreno, Michael A. Davis, Ellen Wong, H. Amalia Pasolli, Albert B. Reynolds, Elaine.
CDK Inhibitors: Cell Cycle Regulators and Beyond Arnaud Besson, Steven F. Dowdy, James M. Roberts Developmental Cell Volume 14, Issue 2, Pages
Pyramidal Neurons Grow Up and Change Their Mind Gord Fishell, Carina Hanashima Neuron Volume 57, Issue 3, Pages (February 2008) DOI: /j.neuron
Cell-to-Cell Transfer of M. tuberculosis Antigens Optimizes CD4 T Cell Priming Smita Srivastava, Joel D. Ernst Cell Host & Microbe Volume 15, Issue 6,
Shaping Genetic Alterations in Human Cancer: The p53 Mutation Paradigm Thierry Soussi, Klas G. Wiman Cancer Cell Volume 12, Issue 4, Pages (October.
Sensory Detection of Food Rapidly Modulates Arcuate Feeding Circuits Yiming Chen, Yen-Chu Lin, Tzu-Wei Kuo, Zachary A. Knight Cell Volume 160, Issue 5,
Gastrulation Movements: the Logic and the Nuts and Bolts Maria Leptin Developmental Cell Volume 8, Issue 3, Pages (March 2005) DOI: /j.devcel
Quantitative Single-Cell Approaches to Stem Cell Research Martin Etzrodt, Max Endele, Timm Schroeder Cell Stem Cell Volume 15, Issue 5, Pages (November.
Cancer: Inappropriate Expression of Stem Cell Programs?
Linking miRNA Regulation to BCR-ABL Expression: The Next Dimension
Protein Networks in Alzheimer’s Disease
Accelerating drug discovery: Open source cancer cell biology?
A Time to Divide: Does the Circadian Clock Control Cell Cycle?
The Evolution of the Algorithms for Collective Behavior
DAISY: Picking Synthetic Lethals from Cancer Genomes
Natalia J. Martinez, Richard I. Gregory  Cell Stem Cell 
Regulating Cancer Stem Cells the miR Way
Octavio Ramilo, Asunción Mejías  Cell Host & Microbe 
New Views into the Genetic Landscape of Metastatic Breast Cancer
Volume 131, Issue 1, Pages (October 2007)
Jan Philipp Junker, Alexander van Oudenaarden  Molecular Cell 
Pejman Mohammadi, Niko Beerenwinkel, Yaakov Benenson  Cell Systems 
Copyright © 2012, Elsevier Inc. All rights Reserved.
Computing at the Front-End by Receptor Networks
Global Edgetic Rewiring in Cancer Networks
Systems Biology Strikes Gold
MicroRNAs and Viral Infection
Copyright © 2013 Elsevier Inc. All rights reserved.
Copyright © 2012, Elsevier Inc. All rights Reserved.
Tunable NF-κB Oscillations in Yeast
Modeling Transcriptome Dynamics in a Complex World
Copyright © 2012, Elsevier Inc. All rights Reserved.
Copyright © 2013 Elsevier Inc. All rights reserved.
Copyright © 2013 Elsevier Inc. All rights reserved.
A FIRE-y PAGE in the Computational Analysis of Cancer Profiles
The Plasticity of Aging: Insights from Long-Lived Mutants
Modeling Functionality with Use Cases
Copyright © 2012, Elsevier Inc. All rights Reserved.
Copyright © 2012, Elsevier Inc. All rights Reserved.
The Hidden Memory of Differentiating Cells
Copyright © 2013 Elsevier Inc. All rights reserved.
To Infinium, and Beyond! Cancer Cell
Copyright © 2012, Elsevier Inc. All rights Reserved.
Immune Cells Exploit a Neural Circuit to Enter the CNS
A Host MicroRNA Brokers Truce with HSV-1
Volume 12, Issue 6, Pages (December 2007)
Presentation transcript:

Synthetic Gene Circuits Learn to Classify Andriy Didovyk, Lev S. Tsimring  Cell Systems  Volume 4, Issue 2, Pages 151-153 (February 2017) DOI: 10.1016/j.cels.2017.02.001 Copyright © 2017 Elsevier Inc. Terms and Conditions

Figure 1 In Silico Design of miRNA-Based Gene Circuits for Robust Classification of Cancer Cells (A) Parameter optimization using a library of models for elementary miRNA-based gene networks. (B) Computational evolutionary search of the optimal classifier gene circuit topology using the datasets of miRNA expression in various healthy and cancer cell types. (C) In silico validation of the synthetic classifier by discriminating between healthy and cancerous cells based on their miRNA signatures. Cell Systems 2017 4, 151-153DOI: (10.1016/j.cels.2017.02.001) Copyright © 2017 Elsevier Inc. Terms and Conditions