June 2009, Ann Arbor, Michigan Tissue Banks and Pathology Tools Workspace Face to Face Ian Fore, DPhil Center for Bioinformatics, National Cancer Institute

Welcome from University of Michigan Brian D. Athey, Ph.D. Professor of Biomedical Informatics Associate Director, Center for Computational Medicine and Biology (CCMB)CCMB Director, Biomedical Informatics Program (BIP), Michigan Institute for Clinical and Health Research (MICHR)/Clinical and Translational Science Awards (CTSA) MICHRCTSA Kenneth J. Pienta, M.D. Professor, Department of Internal Medicine Professor, Department of Urology Associate Dean for Clinical and Translational Research Director, Urologic Oncology

Logistics Restrooms: Outside to your left (near elevators/stairs) Wireless: Internet connection information is on the back of your name badge Networking session tonight from 5:30 PM to ~ 6:30 PM in the Atrium Shuttle service back to the hotel tonight 6:15 PM and again at 6:45 PM Tomorrow/Thursday this meeting starts again at 8:00 AM Starbucks/Café one floor below (take elevator or stairs) Please refer to the Agenda in your packet. We will try to stay to the times noted.

Location 3 rd and 4 th Floors Schemata of the 3 rd and 4 th floors of Palmer Commons

The Tissue Banks and Pathology Tools Team Photo of the Red Wing Hockey Team

TBPT Team Ian Fore, DPhil Associate Director, Biorepository and Pathology Informatics, National Cancer Institute Center or Bioinformatics Juergen Klenk, Ph.D. Senior Associate, Booz Allen Hamilton, TBPT outgoing Workspace Lead Anna Fernandez, Ph.D. Associate, Booz Allen Hamilton, TBPT incoming Workspace Lead Sudha Chudamani and Michelle Lee Technical Leads, SAIC-Frederick, TBPT Workspace Elizabeth (Libby) Prince Senor Associate, Technology, Sapient TBPT Workspace Andrew Breychack Manager, Program Management, Sapient, TBPT Workspace Kenyon Erickson Program Manager, Sapient, TBPT Workspace Donna Messersmith caTissue Product Representative, SAIC-Frederick, TBPT Workspace Beth DiGiulian Booz Allen Hamilton, TBPT Workspace Coordinator

Date for your Diary caBIG Annual Meeting July 20 – 22, 2009 Marriott Wardman Park Hotel

Agenda – Wednesday June 3, 2009 The Common Biorepository Model – Session I Break (10-10:30am) The Common Biorepository Model – Session II Interoperability at Work – Life Sciences Roadmap I Lunch (12:15-1:15pm) caTissue Suite Users I / Data Sharing and Intellectual Capital Knowledge Center Break (3-3:30pm) caTissue Suite Breakout 1: Domain Topics (3:30-5:30pm) caTissue Suite Breakout 2: Technical Topics (3:30-5:30pm) Networking Event with caTissue and Pathology Imaging Tools Demos (5:30-6:30)

Agenda – Thursday June 4, 2009 Pathology Imaging I: Pathology Imaging Archive Use Cases –with Working Groups – please sign up for preferred Working Group Break (10:15-10:45am) Pathology Imaging Use Cases Debrief Interoperability at Work – Life Sciences Roadmap III, COPPA Lunch (12 -1pm) Interoperability at Work – Life Science Roadmap IV, CTMS & TBPT integration Clinical Pathology Interoperability with vendors – LabInfoTech Summit Interop 4pm - TBPT F2F June 2009 comes to a close

Pathology Imaging Working Sessions: Thursday June 4 AM 1.Research Use Case with The Cancer Genome Atlas (TCGA) Geoblastoma Multiform (GBM)–Annotation Requirements (limited focus on Markup) – deep dive into what is needed to annotate slide & define process for vetting new annotation terms into the PathArch annotation. 2.Education Use case: Training for pathology, archive use case - to address teaching (identify unique requirements). 3.Research Use Case: anatomic pathology reporting for tissue banking and bio-repositories - how this will integrate with caTissue. 4.Research Use Case: Efficacy of new grading systems. How to use the PathArch to evaluate new grading systems against previously diagnosed cases with older grading system. Sign-up sheets at Registration and at Networking Event – please sign up for preferred working group. Final groupings will be announced on Thursday morning.