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InfoBoosters: Connecting Texts with Databases BOOST BOX, DEC 9, 2014 NATIONAL NETWORK OF LIBRARIES OF MEDICINE, MIDDLE ATLANTIC REGION ANSUMAN CHATTOPADHYAY,

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Presentation on theme: "InfoBoosters: Connecting Texts with Databases BOOST BOX, DEC 9, 2014 NATIONAL NETWORK OF LIBRARIES OF MEDICINE, MIDDLE ATLANTIC REGION ANSUMAN CHATTOPADHYAY,"— Presentation transcript:

1 InfoBoosters: Connecting Texts with Databases BOOST BOX, DEC 9, 2014 NATIONAL NETWORK OF LIBRARIES OF MEDICINE, MIDDLE ATLANTIC REGION ANSUMAN CHATTOPADHYAY, PHD HEAD, MOLECULAR BIOLOGY INFORMATION SERVICE HEALTH SCIENCES LIBRARY SYSTEM UNIVERSITY OF PITTSBURGH ANSUMAN@PITT.EDU

2 http://www.hsls.pitt.edu/molbio

3 In silico Support Literature Search Sequence Analysis Omics Data Analysis

4 WorkshopsWeb Dev Software Licensing Bioinformatics Consultations Molecular Biology Information Service http://www.hsls.pitt.edu/molbio

5 InfoBoosters www.hsls.pitt.edu/infoboosters

6 InfoBoosters Why What How To Use To Create To Bundle

7 Research in Post-Genome Era Green etal., Nature 470, February 10, 2011

8 Information Overload 285K Breast Cancer 110K Schizophrenia 11K BRCA1 73 K p53

9 Molecular Databases and Bioinformatics Software

10 Gene: BRCA1 / BRAF/EGFR Structure Function Expression Genomic Context Disease- Association Multidimensional Data

11 Genes Mutations Drugs Clinical Trials Classifications Disease: Asthma cancer schizophrenia Multidimensional Data

12 Structure Function Expression Genomic Context Mutations One-Dimensional Reading Format

13 how is it calculated ? what is its function ? what is its structure? Challenges for Biomedical Scientists

14 On-Demand Information

15 Bookmarklets : bookmarks stored in a web browser that contains JavaScript commands to extend the browser's functionality. a bookmarklet might allow the user to select text on a page, click the bookmarklet, and be presented with a search engine results page for the search term selected. Software as a Bookmark

16 Bookmarklet : Software as a Bookmark

17 Mendeley’s Web Importer

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19 InfoBoosters

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23 How is it calculated ? What is its function ? What is its structure?

24 InfoBoosters: Connecting Texts with the Databases InfoBoosters

25 Create Your Own InfoBooster WWW.hsls.pitt.edu/infoboosters

26 Clinical Trials.gov

27 InfoBooster Generator Go to the Clinical Trials.gov Website and do a search with a one-word search term, such as asthma 1 1

28 InfoBooster Generator COPY the URL from the search result page 2 2

29 InfoBooster Generator 3 3 4 4 5 5 WWW.hsls.pitt.edu/molbio/infoboosters

30 InfoBooster Generator

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32 InfoBoosters Bundle

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34 Reading Bundles

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37 Create Your Own Bundle http://www.hsls.pitt.edu/infoboosters

38 Compatible Formats

39 FireFox for PDF

40 Mobile Compatible

41 Usage Total Page View: 1150 Average Time on Page: 00:05:23 http://www.hsls.pitt.edu/infoboosters

42 Usage

43 Potential Use Biocuration Library Licensed Resource Promotion : Micromedex, ClinicalKey, Uptodate Teaching Tool : combine multiple Web addresses into one, an easy to distribute bookmarklet

44 InfoBoosters Pros 1.SIMPLE— Easy to use, create, & install 2.UNIVERSAL— Compatible w/most OS & browsers 3.SEAMLESS— Integrates published lit & other databases

45 InfoBoosters Con 1.Search term MUST be visible in the URL to work

46 Acknowledgements Peter Coles http://mrcoles.com/ Chris Zarata http://chris.zarate.org/ Janis Elsts W-shadow.com https://github.com/ Angie Zack Web & Application Programmer University of Pittsburgh Carrie Iwema Information Specialist in Mol Bio University of Pittsburgh

47 Thank You www.hsls.pitt.edu/infoboosters


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