1. Gene Expression How proteins are made.

2. what monomers make up proteins? what monomers make up nucleic acids (DNA and RNA)? WORKTOGETHERWORKTOGETHER

3. Nucleic Acids Proteins Made up of four different bases Made up of more than than 20 amino acids Primarily DNA, RNA Thousands of different proteins So, how does relatively simple-sounding DNA contain the information for building thousands of different proteins?

4. Codons A “codon” is a sequence of three bases in DNA and RNA. Each codon codes for a different amino acid. This mRNA strand: codes for these amino acids: metcysgluleutrp

5. The Genetic Code All 20 amino acids are coded for. Redundancy of codes is one protection against mutations.

6. The Gene Concept A “gene” is a segment of DNA that codes for a specific protein. Only one side of the DNA double-helix (the “sense” or “coding” strand) contains the actual gene. Genes are defined by promotor and terminator sequences in the DNA.

7. DNA A typical eukaryotic gene consists of sequences of DNA called exons, which code for the amino acids of a protein (medium blue), and intervening sequences called introns (dark blue), which do not. The promoter (light blue) determines where RNA polymerase will begin transcription. Eukaryotic gene structure introns exons promoter

8. A small protein is 30 amino acids long. How many nucleotides are needed to code for it? 1.30 2.60 3.90 4.Depends on which amino acids.

9. The same protein that is 30 amino acids long needs how many codons to code for it? 1.30 2.60 3.90 4.Depends on the amino acids it is made of.

10. Transcription DNA stays in the nucleus. To get information out of one gene on a strand of DNA, the gene must be transcribed. An mRNA copy of a gene leaves the nucleus, so the original information (DNA) remains intact in the nucleus.

11. RNA RNA is a single-stranded nucleic acid. RNA contains the bases adenine, uracil, guanine, and cytosine. RNA contains the sugar ribose in its sugar-phosphate backbone.

13. Which of these is TRUE about RNA: RNA has uracil instead of thymine. RNA is a protein. RNA is a single strand instead of a double-helix. RNA never leaves the nucleus. WORKTOGETHERWORKTOGETHER

14. protein (nucleus) DNA messenger RNA gene (a) Transcription Transcription of the gene produces an mRNA with a nucleotide sequence complementary to one of the DNA strands. (cytoplasm) ribosome Notice that transcription takes place in the nucleus.

15. (a) Initiation RNA polymerase binds to the promoter region of DNA near the beginning of a gene, separating the double helix near the promoter. RNA polymerase DNA promoter gene 1gene 2gene 3

16. (b) Elongation RNA polymerase travels along the DNA template strand (blue), catalyzing the addition of ribose nucleotides into an RNA molecule (pink). The nucleotides in the RNA are complementary to the template strand of the DNA. RNADNA template strand

17. (c) Termination termination signal At the end of a gene, RNA polymerase encounters a DNA sequence called a termination signal. RNA polymerase detaches from the DNA and releases the mRNA molecule.

18. (d) Conclusion of transcription After termination, the DNA completely rewinds into a double helix. The RNA molecule is free to move from the nucleus to the cytoplasm for translation, and RNA polymerase may move to another gene and begin transcription once again. mRNA

19. RNA synthesis and processing in eukaryotes RNA polymerase transcribes both the exons and introns, producing a long RNA molecule. Enzymes in the nucleus then add further nucleotides at the beginning (cap) and end (tail) of the RNA transcript. Other enzymes cut out the RNA introns and splice together the exons to form the true mRNA, which moves out of the nucleus and is translated on the ribosomes. initial RNA transcript to cytoplasm for translation introns cut out and broken down completed mRNA RNA splicing add RNA cap and tail tail cap DNA transcription

20. gene direction of transcription RNA molecules DNA

21. Transcription begins when: 1.RNA polymerase finds a start codon 2.RNA polymerase finds a promoter sequence 3.RNA polymerase finds a ribosome

22. Base-pair matching, DNA mRNA DNA (ns)DNA (sense)mRNA A G T A C G T T C A G U TA A A U C C G G

23. The enzyme that assembles RNA bases to make mRNA is: _________________ This enzyme begins reading DNA at the ____________ sequence of a gene and ends at the ___________ sequence. True or False: The entire DNA strand must be “unzipped” for transcription to take place. WORKTOGETHERWORKTOGETHER RNA Polymerase promoter terminator

24. Translation Once the gene has been transcribed into mRNA, the message must be translated to build a protein. Ribosomes (made of rRNA) “read” the mRNA message and use the information to assemble amino acids.

25. protein (nucleus) DNA messenger RNA gene (b) Translation Translation of the mRNA produces a protein molecule with an amino acid sequence determined by the nucleotide sequence in the mRNA. (cytoplasm) ribosome Notice that translation takes place outside the nucleus, at the ribosomes.

26. The players: mRNA: Carries the encoded instructions for building a protein. Ribosome (rRNA & protein structures): these act like enzymes to catalyze protein assembly. tRNA: Transport RNA molecules that carry amino acids from the cytoplasm to the ribosome.

27. To what class of molecules does tRNA belong? 1.Proteins 2.Carbohydrates 3.Lipids 4.Nucleic acids 5.Depends on which amino acid it carries.

28. What other molecule have we encountered has active sites and acts as a catalyst? How is a ribosome like this molecule? How is it different? WORKTOGETHERWORKTOGETHER

29. Initiation: initiation complex A tRNA with an attached methionine amino acid binds to a small ribosomal subunit, forming an initiation complex. met small ribosomal subunit methionine tRNA amino acid

30. Initiation: The initiation complex binds to an mRNA molecule. The methionine (met) tRNA anticodon (UAC) base-pairs with the start codon (AUG) of the mRNA. tRNA mRNA met

31. Initiation: met The large ribosomal subunit binds to the small subunit. The methionine tRNA binds to the first tRNA site on the large subunit. catalytic site second tRNA binding site large ribosomal subunit first tRNA binding site

32. Elongation: The second codon of mRNA (GUU) base-pairs with the anticodon (CAA) of a second tRNA carrying the amino acid valine (val). This tRNA binds to the second tRNA site on the large subunit. met val catalytic site

33. Elongation: val met peptide bond The catalytic site on the large subunit catalyzes the formation of a peptide bond linking the amino acids methionine and valine. The two amino acids are now attached to the tRNA in the second binding position. Is this hydrolysis or dehydration synthesis?

34. Elongation: val met The “empty” tRNA is released and the ribosome moves down the mRNA, one codon to the right. The tRNA that is attached to the two amino acids is now in the first tRNA binding site and the second tRNA binding site is empty. catalytic site initiator tRNA detaches ribosome moves one codon to right

35. Elongation: val met catalytic site his The third codon of mRNA (CAU) base-pairs with the anticodon (GUA) of a tRNA carrying the amino acid histidine (his). This tRNA enters the second tRNA binding site on the large subunit.

36. The catalytic site forms a new peptide bond between valine and histidine. A three-amino-acid chain is now attached to the tRNA in the second binding site. The tRNA in the first site leaves, and the ribosome moves one codon over on the mRNA. val met his Elongation:

37. This process repeats until a stop codon is reached; the mRNA and the completed peptide are released from the ribosome, and the subunits separate. Termination: completed peptide stop codon val met his arg ile

38. The ribosome has just bonded a series of amino acids into a chain. What has it built? 1.An amino acid. 2.A protein. 3.A nucleic acid. 4.Impossible to tell at this point.

39. When a tRNA leaves the ribosome, it goes off and finds another amino acid in the cell. Where do amino acids in human cells originally come from? Where do they come from in plant cells? WORKTOGETHERWORKTOGETHER

40. (a) DNA (c) tRNA (b) mRNA (d) protein template DNA strand complementary DNA strand gene codons anticodons methionineglycinevaline amino acids etc.

41. direction of transcription ribosome RNA polymerase DNA mRNA protein

42. DNA (Sense)mRNAAmino Acids T A C G G T A G A DNA to mRNA to Protein A U G C C C A U U U methionine (start) proline serine

43. DNA (Sense)mRNA (sense)Amino Acids C A A T G A A C T DNA to mRNA to Protein G U A C G U U U A valine threonine stop codon

44. Practice Transcription and Translation: http://learn.genetics.utah.edu/content/begin/dna/transcribe/

45. Translation begins when: 1.The ribosome finds a promoter sequence. 2.The ribosome finds a start codon. 3.The ribosome breaks apart.

46. The role of the ribosome is: 1.Interpret mRNA and build proteins. 2.Construct mRNA. 3.Replicate DNA. 4.Facilitate cell division.

47. The role of tRNA is: 1.Transcribe DNA and move mRNA out of the nucleus. 2.Bind to the ribosome and mRNA chain together. 3.Carry amino acids to the ribosome. 4.Replace T with U when transcribing mRNA.

48. If genes code for proteins, what codes for enzymes? 1.Genes 2.Non-coding DNA 3.Other proteins 4.Nothing. They’re manufactured in the smooth ER.

49. Write out the mRNA strand that would be formed from this DNA segment: C A T A T G G G C T T A T A C If the segment doesn’t include the start or stop codon, how many amino acids does it code for? WORKTOGETHERWORKTOGETHER

50. Suppose a segment of DNA contains the triplet ACG, and a mutation changes it to ACT. Would that cause a change in the resulting amino acid chain? Use your knowledge of transcription and translation to find the answer. WORKTOGETHERWORKTOGETHER

51. Gene Regulation All cells in the human body have the same DNA and the same set of genes, yet different cells look different and do different jobs. Cells have systems to regulate which genes are “turned on” (transcribed) and which are not.

52. 1 transcription 5 degradation 3 translation 4 modification mRNAtRNA pre-mRNAtRNA rRNA + proteins 2 mRNA processing 2 mRNA processing ribosomes amino acids product substrate active protein amino acids inactive protein DNA Cells can regulate a protein’s activity by modifying it. If the active protein is an enzyme, it will catalyze a chemical reaction in the cell. Cells can control the frequency of transcription. Different mRNAs may be produced from a single gene. Cells can control the stability and rate of translation of particular mRNAs. Cells can regulate a protein’s activity by degrading it.

53. (a) Structure of the lactose operon codes for repressor protein operator: repressor protein binds here promoter: RNA polymerase binds here structural genes that code for enzymes of lactose metabolism RPOgene 1gene 2gene 3 The lactose operon consists of a regulatory gene, a promoter, an operator, and three structural genes that code for enzymes Involved in lactose metabolism. The regulatory gene codes for a protein, called a repressor, which can bind to the operator site under certain circumstances.

54. When lactose is not present, repressor proteins bind to the operator of the lactose operon. When RNA polymerase binds to the promoter, the repressor protein blocks access to the structural genes, which therefore cannot be transcribed. (b) Lactose absent repressor protein bound to operator, overlaps promoter RPgene 1gene 2gene 3 RNA polymerase transcription blocked free repressor proteins

55. (c) Lactose present When lactose is present, it binds to the repressor protein. The lactose-repressor complex cannot bind to the operator, so RNA polymerase has free access to the promoter. The RNA polymerase transcribes the three structural genes coding for the lactose-metabolizing enzymes. ROgene 1gene 2gene 3 RNA polymerase binds to promoter, transcribes structural genes lactose- metabolizing enzymes synthesized lactose bound to repressor proteins

56. Recap Transcription moves coded information from DNA to the ribosome by creating an mRNA copy of a gene. In translation, a ribosome “reads” the mRNA code and uses the information to assemble a chain of amino acids to make a protein.