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IDigBio: Addressing a BIO Big Data Challenge. A. Matsunaga, et al. 2013 IEEE e-Science. 2013: 78-87 How iDigBio is Different.

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Presentation on theme: "IDigBio: Addressing a BIO Big Data Challenge. A. Matsunaga, et al. 2013 IEEE e-Science. 2013: 78-87 How iDigBio is Different."— Presentation transcript:

1 iDigBio: Addressing a BIO Big Data Challenge

2 A. Matsunaga, et al. 2013 IEEE e-Science. 2013: 78-87 How iDigBio is Different

3 The Data Landscape is Changing https://www.idigbio.org/content/collaborating-institutions

4 Research Use & Training Cloud-Based Data Store Community Building Tools, APIs & Workflows Outreach/ Education Data Capture/ Annotation Best Practices

5 Community Building is Key

6 A. Matsunaga, et al. 2013 IEEE e-Science. 2013: 78-87 CI Design: Integrate, Leverage, Re-Use

7 now2050 now2050 Flatspike sedge (Abildgaardia ovata) Scrub plum (Prunus geniculata) C. Germain-Aubrey et al. - 1600 spp., 511,000 GPS iDigBio Data Lead to Discovery

8 Accelerating Digitization of Biodiversity Research Specimens through Online Public Participation Aiming Up: Natural History Collections as Emerging Resources for Innovative Undergraduate Education in Biology A Computational- and Storage-Cloud for Integration of Biodiversity Collections Five task clusters that enable efficient and effective digitization of biological collections Augmenting optical character recognition (OCR) for improved digitization: Strategies to access scientific data in natural history collections A workflow for text extraction and parsing for herbarium specimens Integrating specimen databases and revisionary systematics Reaching Consensus in Crowdsourced Transcription of Biocollections Information Semantics in Support of Biodiversity Knowledge Discovery A Specimen-based View of the World: Using the Biological Collections Ontology to Model Biodiversity Collections And to Best Practices

9 NSF Plays an Active Role

10 Bridging Investments: Trees + Specimens + Tools

11 http://www.dataone.org Community Input: Now and Future

12 A Model for Community-Driven CI

13 Anne Maglia amaglia@nsf.gov @ammaglia NSF/BIO/DBI iDigBio: http://www.idigbio.org


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