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Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.

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Presentation on theme: "Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi."— Presentation transcript:

1 Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi Fredrik Ronquist School of Computational Science, Florida State University

2 Hymenoptera one of 4 megadiverse insect orders (>115,000 described spp.) includes sawflies, ants, bees, social wasps, parasitic wasps

3 Hymenoptera Relationships

4 HymAToL - Assembling the Tree of Life for Hymenoptera >30 people collaborating to resolve relationships between the major lineages of Hymenoptera molecules morphology

5 Terminological Issues same spelling but different structure (e.g., “face”)

6 same structure but different spelling Terminological Issues “unguis” or “(pre)tarsal claw”

7 Terminological Issues obscure terms outdated terms (=to be discouraged) or taxon-specific terms alitrunk gaster

8 Ontology - controlled, explicit vocabulary includes relationships (“part of”, “synonym of”, etc.) hierarchical treats outdated terminology terms are verbally defined and illustrated incorporates taxon-specificity Several ways to implement and benefit...

9 Search for - “claw” “pretarsus” “orbicula” “ungues” “unguis”

10 OR Search for - “pretarsus” + related terms

11 Annotations high-lighting feedback

12 Phylogenetic tools high-lighting feedback

13 Terminological Issues same spelling but different structure (e.g., “face”)

14 online atlas of hymenopteran morphology Other implementations/benefits “approved” terminology (ISH)

15 bioinformatics colleagues [Term] id: 587 name: scrobal groove def: "A horizontal groove on the mesopleuron that may be continuous with the episternal groove anteriorly and ends at the pleural grove posteriorly” ref: "Goulet H, Huber JT, 1993. Hymenoptera of the World: An Identification Guide to Families. Research Branch, Agriculture Canada Publication 1894/E., Ottawa, ON. 668 pp.” link: " ” relationship: part_of 157 ! mesopleuron relationship: is_a 138 ! groove data dump REAL ONTOLOGY mx backend

16 NSF-funded MorphBank project (http://morphbank.net/) Neil Sarkar (AMNH), Donat Agosti (AMNH), Norm Johnson (OSU), Matt Yoder (TAMU), et alia plurima Acknowledgments


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