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SGN new user-friendly homepage design. Easy access to the major tools and datasets.

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Presentation on theme: "SGN new user-friendly homepage design. Easy access to the major tools and datasets."— Presentation transcript:

1 SGN new user-friendly homepage design. Easy access to the major tools and datasets

2 Breeders Toolbox page redesigned with quick links to the major SGN Breeders tools

3 SGN 'trait search' page. Search traits associated with QTLs Type the trait name Browse the list of traits Browse by available QTL population

4 SGN help page for 'Trait Search'

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11 QTL analysis A QTL tool, solQTL, has been implemented, allowing users to upload data and analyze QTLs on-line (http://solgenomics.net/phenome/qtl_form.plhttp://solgenomics.net/phenome/qtl_form.pl

12 QTL analysis Private means only the person who loaded the data has access.

13 Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

14 Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

15 Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

16 Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

17 Phenotype Ontology and traits Traits are were added in a controlled vocabulary format (ontology) whenever required for adding potato phenptyped trait

18 Phenotype Ontology and traits Traits are were added in a controlled vocabulary format (ontology) whenever required for adding potato phenptyped trait * More traits will be added as SGN continues to load SolCAP phenotyping experiments. Breeder-specific terms will be used as the trait name, and different descriptors will be mapped to the ontology using synonyms, allowing to query the database with any similar terms from different descriptor systems (e.g. 'shoot maturity' and 'vine maturity').


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