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Bottom line on databanks. Relational vs flat-file.

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Presentation on theme: "Bottom line on databanks. Relational vs flat-file."— Presentation transcript:

1 Bottom line on databanks

2 Relational vs flat-file

3 data tables SQL SQL can be used to connect/join and search tables Example: GI numbers -> sequence and GI numbers to taxonomic information

4 data warehouse

5 Inteins Protein Introns Found in Bacteria, Phage, Eukaryotes and Archaea Many contain homing endonucleases DNA RNA Protein Extein Intein + Host Protein Splicing and Homing Endo- nuclease Domains

6 Small and large Inteins

7

8 Large Intein with DNA

9 Retained as Functional Endonuclease Homing Cycle Degeneration Acquisition of New Function Precise Loss Intein/Intron without or with Dysfunctional Homing Endonuclease Intein/Intron with Functional Homing Endonuclease Intein/Intron with HE from another Gene, Species, Population, or Subpopulation. Transfer of Homing Endonuclease and Invasion of Local Population Empty Target Site

10


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