1. Fundamentals of Microbiology “Introduction to the biology of bacterial and archaeal organisms” Topics include microbial cell structure and function, methods of cultivation, genetics, phylogeny and taxonomy, and metabolic and genetic diversity. ”

2. Lecture 1 1.1 Microbiology 1.1 Microbiology 1.2 Microorganisms as Cells 1.2 Microorganisms as Cells 1.3 Microorganism and Their Natural Environments 1.3 Microorganism and Their Natural Environments 1.4 The Impact of Microorganisms on Humans 1.4 The Impact of Microorganisms on Humans

3. What is Microbiology? The science of microorganisms (very small, unicellular organisms) The science of microorganisms (very small, unicellular organisms) The discipline is just over a century old The discipline is just over a century old Has given rise to molecular biology and biotechnology Has given rise to molecular biology and biotechnology

4. Early Microbiology 3 historical discoveries –Invention of the microscope –Disproving spontaneous generation –Demonstrating microorganisms cause disease

5. Antoni van Leeuwenhoek Inventor of the first microscope (1684)

6. Spontaneous Generation Spontaneous generation: –Life can arise from non-living materials. Pasteur demonstrated that microorganisms in the air were responsible for food spoilage –Constructed a swan-necked flask

8. Germ Theory of Disease Proof that microorganisms caused disease Robert Koch demonstrated that anthrax was caused by Bacillus anthracis –Blood from a diseased animal caused disease in a healthy animal –Cultivated the disease causing agent outside the animal’s body, then introduced the agent into a healthy animal which subsequently developed the disease

13. Methods in Microbiology Three important techniques that allowed the advanced study of microbiology: –Microscopy –Sterilisation –Pure culture

15. Electron Microscopy To visualise the internal structure - TEM Electrons instead of light Greater resolving power Disadvantages: –Expensive –A high vacuum is required –Very thin sections (<100 nm thick)

17. Figure 1.2a Bacterial cells viewed with light microscope

18. Figure 1.2b Bacterial cell viewed with electron microscope

19. Root Nodule

20. Bacteroids within Root Nodule

21. Sterilisation and Pure Culture Culture: population of microorganisms grown under well defined conditions –Pure culture – one that contains one type of microorganism –Mixed culture – more than one microorganism Need to isolate microorganism from mixed cultures

22. Sterilisation Techniques Sterilisation using heat –Dry heat: 160 ºC for 2 h –Wet heat: Autoclave, 120 ºC Sterilisation using chemicals –Volatile, toxic (ethylene oxide) –Sterilise plastics Filtration –Pore size approx. 0.22 µm

23. Pure Culture Technique Isolation pure cultures by plating (streak plate)

25. The Microbial World Microorganisms are everywhere: air, soil, water, plants, animals Microbial life is diverse –Bacteria have existed for 3x10 9 years –Evolved to flourish in the most inhospitable environments

26. What are Microbes?

27. Microbes show morphological diversity Size - most are 1-5 microns, but range from 0.1 to 660 microns per cell. Viruses even smaller

28. prokaryotic cell eukarotic cell

32. Why study Microbiology? Microorganisms were the first life on earth Microorganisms were the first life on earth Microorganisms created the biosphere that allowed multicellular organisms to evolve Microorganisms created the biosphere that allowed multicellular organisms to evolve Multicellular organisms evolved from microorganisms Multicellular organisms evolved from microorganisms >50% of the biomass on earth is comprised of microorganisms >50% of the biomass on earth is comprised of microorganisms Microorganisms will be on earth forever Microorganisms will be on earth forever

33. 4.5 4.0 3.5 3.0 2.5 2.0 1.5 1.0 0.5 0 BYA Formation of O 2 atmosphere Cyanobacterial microfossils (oxygenic photosynthesis) Earth formed First microorganisms? algae, marine invertebrates insects mammals No free O 2 Reducing environment

35. Why study Microbiology? Our understanding of life has arisen largely from studies of microorganisms (biochemistry and genetics) Our understanding of life has arisen largely from studies of microorganisms (biochemistry and genetics) Studies of microorganisms continue to contribute to fundamental knowledge of life processes Studies of microorganisms continue to contribute to fundamental knowledge of life processes We still know very little about the microorganisms that are present on Earth We still know very little about the microorganisms that are present on Earth

36. Figure 1.4

37. Why study Microbiology? Health Health Agriculture Agriculture Food Food Environment Environment

41. Infectious diseases are no longer the leading cause of death in North America, due to the development and use of antimicrobial agents, and improved sanitary practices