1. Showing your working: a how to guide to reproducible research

2. Research fellow at the Alan Turing Institute for Data Science
Research associate in the Brain Mapping Unit, Department of Psychiatry, University of Cambridge
2016/17 Mozilla Fellow for Science

3. Reproducible vs Replicable

4. Data
Same
Different
Code

5. Data
Same
Different
Code
Reproducible

6. Data
Same
Different
Code
Reproducible
Replicable

7. Data
Same
Different
Code
Reproducible
Replicable
Robust

8. Data
Same
Different
Code
Reproducible
Replicable
Robust
Generalisable

9. Barriers to reproducible research

10. Barriers to reproducible research
Is not considered for promotion
Requires additional skills
Plead the 5th
Barriers to reproducible research
Support additional users
Takes time
Held to higher standards than others
Publication bias towards novel findings

11. Barriers to reproducible research
Is not considered for promotion
Requires additional skills
Plead the 5th
Barriers to reproducible research
Support additional users
Takes time
Held to higher standards than others
Publication bias towards novel findings

12. Barriers to reproducible research
Is not considered for promotion
Requires additional skills
Plead the 5th
Barriers to reproducible research
Support additional users
Takes time
Held to higher standards than others
Publication bias towards novel findings

13. Barriers to reproducible research
Is not considered for promotion
Requires additional skills
Plead the 5th
Barriers to reproducible research
Support additional users
Takes time
Held to higher standards than others
Publication bias towards novel findings

14. Barriers to reproducible research
Is not considered for promotion
Requires additional skills
Plead the 5th
Barriers to reproducible research
Support additional users
Takes time
Held to higher standards than others
Publication bias towards novel findings

15. Barriers to reproducible research
Is not considered for promotion
Requires additional skills
Plead the 5th
Barriers to reproducible research
Support additional users
Takes time
Held to higher standards than others
Publication bias towards novel findings

16. Barriers to reproducible research
Is not considered for promotion
Requires additional skills
Plead the 5th
Barriers to reproducible research
Support additional users
Takes time
Held to higher standards than others
Publication bias towards novel findings

17. Start small

18. Protocols.io

21. Coding your analyses

22. Comments are your friend!

24. Aim for 40% comments in your code

25. Share your comments with the original author

26. (which is almost always going to be YOU!)

27. https://twitter.com/kcranstn/status/370914072511791104

28. What if I can’t share my code until I’m published?

30. Python vs R (vs Matlab vs STATA etc…)

32. Shiny gallery

33. Anaconda

34. Click each example to see source code
Matplotlib gallery
Click each example to see source code
Matplotlib & Seaborn

36. Jupyter Notebook

38. Asking for help: StackOverflow & MWEs

39. https://mrcolley.com/2014/07/01/
talk-to-the-duck-debugging-and-resilience

40. Version Control

43. Some jargon busting Clone Repository Pull request Branch
Version control
Merge
Issues
Release
Commit
Fork
Markdown

44. Submit your first pull request!
Inspired by:

45. Submit your first pull request!
Inspired by:

46. Community https://www.mozillascience.org http://software-carpentry.org

47. Thank you! KirstieJane/ReproducibleResearch @kirstie_j
doi: /m9.figshare