William Terzaghi Spring 2014 Bio 398: Topics in Plant Biology
COURSE OVERVIEW 1) Understanding how plants work. 2) Understanding how plant biologists work. Method Technology
COURSE OVERVIEW 1) Understanding how plants work. 2) Understanding how plant biologists work. Method Technology 14.html
COURSE OVERVIEW 1) Understanding how plants work. 2) Understanding how plant biologists work. Method Technology 14.html younger-ones-study-finds
Plan C We will pick a problem in plant biology and see where it takes us. 1.Biofuels 2.Climate/CO 2 change 3.Stress responses/stress avoidance Structural Biochemical (including C3 vs C4 vs CAM) Other (dormancy, carnivory, etc) 4.Plant products Defense compounds 5.Improving food production Breeding: new traits to pick & ways to find them GMO New crops 6.Biotechnology 7.Phytoremediation 8.Plant movements 9.Plant signaling (including neurobiology)
Plan C 1.Pick a problem
Plan C 1.Pick a problem 2.Pick some plants to study
Plan C 1.Pick a problem 2.Pick some plants to study 3.Design some experiments
Plan C 1.Pick a problem 2.Pick some plants to study 3.Design some experiments 4.See where they lead us
Plan C 1.Pick a problem 2.Pick some plants to study 3.Design some experiments 4.See where they lead us Grading? Combination of papers and presentations
Plan C 1.Pick a problem 2.Pick some plants to study 3.Design some experiments 4.See where they lead us Grading? Combination of papers and presentations Scavenger hunts?
Plan C Grading? Combination of papers and presentations First presentation:10 points Research presentation: 10 points Final presentation: 15 points Assignments: 5 points each Poster: 10 points Intermediate report 10 points Final report: 30 points Scavenger hunts?
BIO 398- Resource and Policy Information Instructor: Dr. William Terzaghi Office: SLC 363/CSC228 Office hours: MWF 12-1 in CSC228, T 1-2 in SLC 363, Thurs 1-2 in CSC228, or by appointment Phone: (570)
BIO Resource and Policy Information Instructor: Dr. William Terzaghi Office: SLC 363/CSC228 Office hours: MWF 12-1 in CSC228, T 1-2 in SLC 363, Thurs 1-2 in CSC228, or by appointment Phone: (570) Course webpage:
Vegetative Plants 3 Parts 1.Leaf 2.Stem 3.Root
Vegetative Plants 3 tissue types 1.Dermal 2.Ground 3.Vascular
Plant Development Cell division = growth
Plant Development Cell division = growth Determination = what cell can become
Plant Development Cell division = growth Determination = what cell can become Differentiation = cells become specific types
Plant Development Cell division = growth Determination = what cell can become Differentiation = cells become specific types Pattern formation: developing specific structures in specific locations
Plant Development Cell division = growth Determination = what cell can become Differentiation = cells become specific types Pattern formation Morphogenesis: organization into tissues & organs
Plant Development umbrella term for many processes embryogenesis
Plant Development umbrella term for many processes Embryogenesis Seed dormancy and germination
Plant Development umbrella term for many processes Embryogenesis Seed dormancy and germination Seedling Morphogenesis
Plant Development umbrella term for many processes Embryogenesis Seed dormancy and germination Seedling Morphogenesis Transition to flowering, fruit and seed formation
Plant Development umbrella term for many processes Embryogenesis Seed dormancy and germination Seedling Morphogenesis Transition to flowering, fruit and seed formation Many responses to environment
Plant Development Umbrella term for many processes Unique features of plant development Cell walls: cells can’t move: Must grow towards/away from signals
Plant Development Umbrella term for many processes Unique features of plant development Cell walls: cells can’t move: must grow instead Plasticity: plants develop in response to environment
Unique features of plant development Cell walls: cells can’t move Plasticity: plants develop in response to environment Totipotency: most plant cells can form an entire new plant given the correct signals
Unique features of plant development Cell walls: cells can’t move Plasticity: plants develop in response to environment Totipotency: most plant cells can form an entire new plant given the correct signals Meristems: plants have perpetually embryonic regions, and can form new ones
Unique features of plant development Cell walls: cells can’t move Plasticity: plants develop in response to environment Totipotency: most plant cells can form an entire new plant given the correct signals Meristems: plants have perpetually embryonic regions, and can form new ones No germ line!
Unique features of plant development Meristems: plants have perpetually embryonic regions, and can form new ones No germ line! Cells at apical meristem become flowers: allows Lamarckian evolution!
Unique features of plant development Meristems: plants have perpetually embryonic regions, and can form new ones No germ line! Cells at apical meristem become flowers: allows Lamarckian evolution! Different parts of the same 2000 year old tree have different DNA & form different gametes
Plant Cell Theory 1) All organisms are composed of one or more cells
Plant Cell Theory 1) All organisms are composed of one or more cells 2) Cell is smallest living organizational unit
Plant Cell Theory 1) All organisms are composed of one or more cells 2) Cell is smallest living organizational unit 3) Cells arise by division of preexisting cells
Plant Cells 1) Highly complex and organized
Plant Cells 1) Highly complex and organized 2) Metabolism
Plant Cells 1) Highly complex and organized 2) Metabolism 3) Reproduction
Plant Cells 1) Highly complex and organized 2) Metabolism 3) Reproduction 4) Heredity
Plant Cells 1) Highly complex and organized 2) Metabolism 3) Reproduction 4) Heredity 5) Mechanically active
Plant Cells 1) Highly complex and organized 2) Metabolism 3) Reproduction 4) Heredity 5) Mechanically active 6) Respond to stimuli
Plant Cells 1) Highly complex and organized 2) Metabolism 3) Reproduction 4) Heredity 5) Mechanically active 6) Respond to stimuli 7) Homeostasis
Plant Cells 1) Highly complex and organized 2) Metabolism 3) Reproduction 4) Heredity 5) Mechanically active 6) Respond to stimuli 7) Homeostasis 8) Very small
Why are cells so small? 1) many things move inside cells by diffusion
Why are cells so small? 1) many things move inside cells by diffusion 2)surface/volume ratio
Why are cells so small? 1) many things move inside cells by diffusion 2) surface/volume ratio surface area increases more slowly than volume
Why are cells so small? 1) many things move inside cells by diffusion 2) surface/volume ratio surface area increases more slowly than volume exchange occurs only at surface eventually have insufficient exchange for survival
Plant Cells 1)Cell walls Carbohydrate barrier surrounding cell
Plant Cells 1)Cell walls Carbohydrate barrier surrounding cell Protects & gives cell shape
Plant Cells 1)Cell walls Carbohydrate barrier surrounding cell Protects & gives cell shape 1˚ wall made first mainly cellulose
Plant Cells 1)Cell walls Carbohydrate barrier surrounding cell Protects & gives cell shape 1˚ wall made first mainly cellulose Can stretch!
Plant Cells 1)Cell walls Carbohydrate barrier surrounding cell Protects & gives cell shape 1˚ wall made first mainly cellulose Can stretch! 2˚ wall made after growth stops
Plant Cells 1)Cell walls Carbohydrate barrier surrounding cell Protects & gives cell shape 1˚ wall made first mainly cellulose Can stretch! 2˚ wall made after growth stops Lignins make it tough
Plant Cells 1)Cell walls Carbohydrate barrier surrounding cell Protects & gives cell shape 1˚ wall made first mainly cellulose Can stretch! 2˚ wall made after growth stops Lignins make it tough Problem for "cellulosic Ethanol" from whole plants
Plant Cells 1)Cell walls 1˚ wall made first 2˚ wall made after growth stops Lignins make it tough Problem for "cellulosic Ethanol" from whole plants Middle lamella = space between 2 cells
Plant Cells 1)Cell walls 1˚ wall made first 2˚ wall made after growth stops Middle lamella = space between 2 cells Plasmodesmata = gaps in walls that link cells
Plant Cells Plasmodesmata = gaps in walls that link cells Lined with plasma membrane
Plant Cells Plasmodesmata = gaps in walls that link cells Lined with plasma membrane Desmotubule joins ER of both cells
Plant Cells Plasmodesmata = gaps in walls that link cells Lined with plasma membrane Desmotubule joins ER of both cells Exclude objects > 1000 Dalton, yet viruses move through them!
Types of Organelles 1) Endomembrane System 2) Putative endosymbionts
Endomembrane system Common features derived from ER
Endomembrane system Common features derived from ER transport is in vesicles
Endomembrane system Common features derived from ER transport is in vesicles proteins & lipids are glycosylated
Endomembrane system Organelles derived from the ER 1) ER 2) Golgi 3) Vacuoles 4) Plasma Membrane 5) Nuclear Envelope 6) Endosome 7) Oleosomes
ER Network of membranes t/out cell 2 types: SER & RER
SER tubules that lack ribosomes fns: 1)Lipid syn 2)Steroid syn 3)drug detox 4)storing Ca 2+ 5)Glycogen catabolism
RER Flattened membranes studded with ribosomes 1˚ fn = protein synthesis -> ribosomes are making proteins
ER SER & RER make new membrane!
GOLGI COMPLEX Flattened stacks of membranes made from ER
GOLGI COMPLEX Individual, flattened stacks of membranes made from ER Fn: “post office”: collect ER products, process & deliver them Altered in each stack
GOLGI COMPLEX Individual, flattened stacks of membranes made from ER Fn: “post office”: collect ER products, process & deliver them Altered in each stack Makes most cell wall carbohydrates!
GOLGI COMPLEX Individual, flattened stacks of membranes made from ER Fn: “post office”: collect ER products, process & deliver them Altered in each stack Makes most cell wall carbohydrates! Protein’s address is built in
VACUOLES Derived from Golgi; Fns: 1)digestion a) Organelles b) food particles
VACUOLES Derived from Golgi; Fns: 1)digestion a) Organelles b) food particles 2) storage
VACUOLES Derived from Golgi; Fns: 1) digestion a) Organelles b) food particles 2) storage 3) turgor: push plasma membrane against cell wall
VACUOLES Vacuoles are subdivided: lytic vacuoles are distinct from storage vacuoles!
Endomembrane system Organelles derived from the ER 1) ER 2) Golgi 3) Vacuoles 4) Plasma Membrane Regulates transport in/out of cell
Endomembrane system Organelles derived from the ER 1) ER 2) Golgi 3) Vacuoles 4) Plasma Membrane Regulates transport in/out of cell Lipids form barrier Proteins transport objects & info
Endomembrane System 5) Nuclear envelope: regulates transport in/out of nucleus Continuous with ER
Endomembrane System 5) Nuclear envelope:regulates transport in/out of nucleus Continuous with ER Transport is only through nuclear pores
Endomembrane System 5) Nuclear envelope:regulates transport in/out of nucleus Continuous with ER Transport is only through nuclear pores Need correct signal & receptor for import
Endomembrane System 5) Nuclear envelope: regulates transport in/out of nucleus Continuous with ER Transport is only through nuclear pores Need correct signal & receptor for import new one for export
Endomembrane System Nucleus: spherical organelle bounded by 2 membranes and filled with chromatin = mix of DNA and protein
Endomembrane System Nucleus: spherical organelle bounded by 2 membranes and filled with chromatin fns = information storage & retrieval Ribosome assembly (in nucleolus)
Endomembrane System Endosomes: vesicles derived from Golgi or Plasma membrane Fn: sorting materials & recycling receptors
Endomembrane System Oleosomes: oil storage bodies derived from SER Surrounded by lipid monolayer!
Endomembrane System Oleosomes: oil storage bodies derived from SER Surrounded by lipid monolayer! filled with lipids: no internal hydrophobic effect!