24th APAN Meeting, Xian, China - August 2007 e-Science on VNGrid Project Tran Van Lang, Do Van Long Members of VNGrid Project HCM City Institute of Information.

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Presentation transcript:

24th APAN Meeting, Xian, China - August 2007 e-Science on VNGrid Project Tran Van Lang, Do Van Long Members of VNGrid Project HCM City Institute of Information Technology (IOIT-HCM, VAST)

Contents VNGrid Introduction VNGrid Introduction IOIT-HCM Grid IOIT-HCM Grid E-Science Activities E-Science Activities Plan for Future e-Science in VNGrid Plan for Future e-Science in VNGrid Conclusion Conclusion

VNGrid Introduction IOIT-HCM Introduction IOIT-HCM Introduction History of Grid in Vietnam History of Grid in Vietnam Organizations in VNGrid Organizations in VNGrid Goal of VNGrid project Goal of VNGrid project IOIT-HCM Grid Activities IOIT-HCM Grid Activities

IOIT-HCM Introduction Ho Chi Minh City Institute of Information Technology (IOIT-HCM) VIETNAMESE ACADEMY OF SCIENCE AND TECHNOLOGY (VAST)

History of Grid in Vietnam Conference on HPC and Grid Computing, in HCM City, held by Ministry of Science and Technology The Centers and systems for HPC were founded IOIT-HCM Grid Project HCM City UT Grid Project BK Grid Group, Hanoi UT Grid Group of HCM City College Natural Sciences BioGrid, IOIT-HCM IOIT-HCM connect to Pragma VNGrid Project

6 Five Universities and Institutes were collected to lead and execute VNGrid project: 1. Vietnamese Institute of Information Technology (IOIT, VAST) 2. Hanoi University of Technology (HUT) 3. Vietnamese National University in Hanoi (VNU – Hanoi) 4. Vietnamese Military Technical Academy (VMTA) 5. HCM City Institute of Information Technology (IOIT-HCM, VAST) Organizations in VNGrid

Goals of VNGrid project 1. Establishing the Grid infrastructure in Vietnam: Be connected by five institutions Be connected by five institutions Connecting to other Grid systems Connecting to other Grid systems 2. Studying to deploy the middleware: gLite, Globus,… 3. Building the Grid-based, e-Science Applications : Bioinformatics, Meteorology, Virtual Reality, Cryptography,…  Other scientific applications on Grid system will be encouraged to build and apply to VNGrid  Create the environment for the collaborating and sharing resources for Science and Education  Make Grid more easy to use.

IOIT-HCM Grid Activities

PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM) 9

10

PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM) 11

PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM) 12

13 Applications and Middleware in Pragma testbed Real science applications pair and drive middleware development Real science applications pair and drive middleware development Achieve long-run and scientific results Achieve long-run and scientific results Open to applications of all scientific disciplines Open to applications of all scientific disciplines Climate simulation Climate simulation Savannah/Nimrod (MU, Australia) Savannah/Nimrod (MU, Australia) MM5/Mpich-Gx (CICESE, Mexico; KISTI, Korea) MM5/Mpich-Gx (CICESE, Mexico; KISTI, Korea) Quantum-mechanics, quantum-chemistry: Quantum-mechanics, quantum-chemistry: TDDFT, QM-MD, FMO/Ninf-G (AIST, Japan) TDDFT, QM-MD, FMO/Ninf-G (AIST, Japan) Genomics Genomics iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, China) iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, China) HPM: genomics (IOIT-HCM, Vietnam) HPM: genomics (IOIT-HCM, Vietnam) mpiBlast/Mpich-G2 (ASGC, Taiwan) mpiBlast/Mpich-G2 (ASGC, Taiwan) Organic chemistry Organic chemistry Gamess-APBS/Nimrod (UZurich, Switzerland) Gamess-APBS/Nimrod (UZurich, Switzerland) Molecular simulation Molecular simulation Siesta/Nimrod (UZurich, Switzerland; MU, Australia) Siesta/Nimrod (UZurich, Switzerland; MU, Australia) Amber/Rsh ( USM, Malaysia) Amber/Rsh ( USM, Malaysia) Computer Science Computer Science Load Balancer (IOIT-HCM, Vietnam) Load Balancer (IOIT-HCM, Vietnam) GriddLeS (MU, Australia) GriddLeS (MU, Australia) 2 applications from Vietnam

IOIT-HCM Grid Grid members Grid members Infrastructure of IOIT-HCM Grid system Infrastructure of IOIT-HCM Grid system Network architecture of Grid System connect to KISTI, PRAGMA and VAST Network architecture of Grid System connect to KISTI, PRAGMA and VAST Grid Portal Grid Portal

IOIT-HCM Grid Members

PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM) 16 Infrastructure of IOIT-HCM Grid System

PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM) 17 Network architecture of Grid System connect to KISTI, PRAGMA and VAST

18 IOIT-HCM Grid Portal Our Grid Portal based on opensource packages: Our Grid Portal based on opensource packages: Globus Toolkit 4 Globus Toolkit 4 Java CoG Java CoG Jetspeed Portal Jetspeed Portal Tomcat Tomcat Jboss Jboss Postgresql Postgresql Condor G Condor G GridPort4 GridPort4 GridSphere Framework with JSR168-compatible Portlet Container GridSphere Framework with JSR168-compatible Portlet Container

E-Science Activities in IOIT-HCM Grid and BioScience – BioGrid Portal Grid and BioScience – BioGrid Portal AccessGrid deployment AccessGrid deployment Telemedicine Telemedicine

Grid and BioScience Gird Portal Gird Portal Account and Authentication Account and Authentication GPIR - Grid Portals Information Repository GPIR - Grid Portals Information Repository File Management File Management Job Submission Job Submission Job Sequence Job Sequence GRAM Job GRAM Job Condor Job Submission Condor Job Submission Building Bioinformatics tools with Grid Technology apply on Grid Portal: Building Bioinformatics tools with Grid Technology apply on Grid Portal: Phylogenetic Tree Phylogenetic Tree Blast Blast Motif finding Motif finding Protein Structure Prediction Protein Structure Prediction …

Grid Portal

Gird computing apply for generating the Phylogenetic Tree

IOIT-HCM Grid Portal - Blast deploying

Motif finding Programming in MPI-2 apply on IOIT-HCM Grid System Programming in MPI-2 apply on IOIT-HCM Grid System Programming in MPI-2 apply on IOIT-HCM Grid System Programming in MPI-2 apply on IOIT-HCM Grid System

Protein Structure prediction Programming in MPI-2 with Molecular Dynamic (MD) Algorithm Programming in MPI-2 with Molecular Dynamic (MD) Algorithm Programming in MPI-2 with Molecular Dynamic (MD) Algorithm Programming in MPI-2 with Molecular Dynamic (MD) Algorithm

Access Grid deployment Access Grid for collaboration the multimedia data (IOIT-HCM): Access Grid for collaboration the multimedia data (IOIT-HCM): Support ting to the Conference on IT and Communication in Haiphong, Vietnam (10/2005)

Meeting Room 1 2 nd Floor – Block 1 Meeting Room 3 2 nd Floor – Block 2 Meeting Room 2 1 st Floor – Block 2 Center Room 1 st Floor – Block 1

Telemedicine

Telemedicine Conference on 05/05/05 Hospital of Medical (HCM) vs. VietDuc Hospital (Ha Noi)

Conference between BenTre Province Leaders with University of Medical (HCM) Deploying Telemedicine with AccessGrid Technology from IOIT-HCM

Telemedicine between Nhi Dong 1 Hospital (HCM) with Nguyen Dinh Chieu (Ben Tre Province) Deploying Telemedicine with Video Conferencing Technology from IOIT-HCM

Future E-Science deployment and Other Grid applies on VNGrid Applying the HPC and Grid Computing for climate forecast (Hanoi UT and Center for HPC, Hanoi UNS) Applying the HPC and Grid Computing for climate forecast (Hanoi UT and Center for HPC, Hanoi UNS) Using MM5 model Using MM5 model Simulating some biomedical problems (Hanoi College of Technology) Simulating some biomedical problems (Hanoi College of Technology)

Setup the e-Learning system for training on Gird

Eleanring system of IOIT-HCM deploy in Bamako, Mali, Afica

Research for deploy System in South Provinces of Vietnam Connecting from HCM to Can Tho Provinces

Connecting from HCM to An Giang Province

BirdFlu Observer

Vietnam Digital Map deploying

Join to the Grid Communities

EGEE User Forum AsiaGrid - Singapore

Join to the Grid Communities (cont.) GeoGrid, Pragma 12: Thailand (03/2007) GeoGrid, Pragma 12: Thailand (03/2007) ISGC 07: Taipei (03/2007) ISGC 07: Taipei (03/2007) EGEE User Forum: Manchester (05/2007) EGEE User Forum: Manchester (05/2007) AsiaGrid: Singapore (06/2007) AsiaGrid: Singapore (06/2007) APAN Meeting: China (08/2007) APAN Meeting: China (08/2007) EGEE Meeting: Pudapest (10/2007) EGEE Meeting: Pudapest (10/2007) Do Son School: Vietnam (11/2007) Do Son School: Vietnam (11/2007) …

Future step: Setup Grid on VinaRen Network

48 Conclusion We are studying Grid Technology and try to apply to Science and Education. We are studying Grid Technology and try to apply to Science and Education. Will invest more for the networking and infrastructure Will invest more for the networking and infrastructure Need to connect to the other Grid System for expand the collaboration. Need to connect to the other Grid System for expand the collaboration. Our next step is connecting to EGEE Asia Federation (EAF) to receive the operations technology and experience for deploying e- Science on our Grid Resource Centers. Our next step is connecting to EGEE Asia Federation (EAF) to receive the operations technology and experience for deploying e- Science on our Grid Resource Centers.

Thank for your Attention