REDCap Introduction User Group Meeting By J Kevan Essmyer Acknowledgements: Paul Harris.

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Presentation transcript:

REDCap Introduction User Group Meeting By J Kevan Essmyer Acknowledgements: Paul Harris

Need for Data Capture Software Convenient uniform data entry method – Stateless web-based – Secure WUSM HIPAA compliant centralized data store. Easy to use multi-purpose clinical database – Not Excel, Not Access, Not 3-4 composition notebooks somewhere on the top shelf Mostly self service Reduce data “cleaning” effort during analysis.

File Server Host Server WEB Server Uploaded Files Installation Files Tiresias Server WUCON Sidedoor Server REDCap Survey Data Entry /Admin MySQL Server MySQL Slave Server Data Sync Biostatistics Secure Domain Authenticated Access Public HTTPS Access

Development Server “Trying it Out” REDCap User Request forms (Fax or ) – Sponsoring PI – Username /password – Open access to the Development server Off-campus Access – Sidedoor security certificate – Access from any “capable” Internet connection (world wide)

Case Report Forms Visual Status Data Validation Numerous Field Types + Text (Free) (Number) (Phone) (Zip) (Date) +TextArea +Select +Radio +File Branching Logic Auto-Variable Coding Human Readable Labels PDFs

Field Types

Data Validation

Study Calendar – Participant Scheduling Participant Scheduling Module Optional Visit-Level View Shows Status + CRFs (Longitudinal Model)

REDCap Application (Classic Model) CRFs – Customized For Each Study REDCap Core Modules– Available For All Studies Project-Level Metadata Defined by Research Team

Audit Trails / Data Logging Full Audit Logs – Data Changes and Page Views

Reports

User Permission Rights Hierarchy REDCap Administrators -Grant Access to the System -Grant Creation Rights to PI and Project Admins PI and REDCap Administrators -Full Users Rights to Project -Responsible for setting Right of other users (PHI, Data Entry, Reporting) Regulars Users with restricted permissions

“?!!?” User Rights Branching Logic Scheduling API Data Dictionary Data Validation

REDCap Lifelines Built-in tutorial videos Built-in Frequently Asked Question (FAQ) guide Demonstration Databases (Some Online, more to come) WUSM Biostat REDCap Help Queue – – Monitored by 4 to 5 Administrators

Top-Down and In-Line Video Training Resources

Built-in FAQ

REDCap Support

Project Creation Flow Chart Create Project –Project Name, Longitudinal or Cross-Sectional/ Survey Excel Spreadsheet Or Online Form Designer Data Entry Forms Add Users and Set User Rights Test Forms Move to Production Status on Production Server and start Data Collection Define Study Events (Longitudinal) add Schedule (optional)

Production Server “Real Data” REDCap Project Request form (Fax or ) – Sponsoring PI – IRB Approval or Waiver – Only PI or Project Admin can create projects Production “Status” – Data Dictionary Changes saved Review of submitted changes to avoid unintended data corruption Delete all records function disallowed

Automated Data Export / Import (API) Web based RESTFUL Service – Uses http(s) URL calls similar to the web browser – Programming Language neutral works for (SAS, R, Python, Java) – Advantages Automate access to data and metadata On demand custom Reporting Linking Multiple REDCap Projects (Advanced) All Transactions logged

REDCap WEB Server WUCON Sidedoor Server Data Entry /Admin Biostatistics Secure Domain Authenticated Access Accessible only from the secure Servers Routes User Program API Call Response

Automated Data Export / Import (API) Export Methods – Required items Token – obtained from REDCap administrator must be kept secure Content – record Format – Export data format CSV, JSON, XML(default) Web based RESTFUL Service – Uses http(s) URL calls similar to the web browser – Programming Language neutral works for (SAS, R, Python, Java) – Advantages Automate access to data and metadata On demand custom Reporting Linking Multiple REDCap Projects (Advanced) All Transactions logged

Simple SAS Example filename ein "./etest_in.txt"; filename eout "./etest_out.txt"; filename ehdrout "./etest_hdrout.txt"; data _null_; file ein; input; put _infile_; datalines4; token=8190DC542E1588AF52158EB181193DB9 &content=record&format=xml&type=flat &fields=id, first_name, last_name ;;;; run; quit; proc http in=ein out=eout headerout=ehdrout url=" method="post" ct="application/x-www-form-urlencoded” ; run;

Built-in API Help

REDCap Goals Easy to use Metadata Driven Adaptable Features Data entry validation Self service tool Questions?

Calculations Simple [weight]*10000/([height]*[height]) Complex Calculating the Mean of groups with null valid range includes zero The following equation will calculate the Mean of a list of variables ( (if(Math.abs([A])>0,[A],0)) +(if(Math.abs([B])>0,[B],0)) +(if(Math.abs([C])>0,[C],0)) ) / ( (if(Math.abs([A])>0,1,if([A]=0,1,0)) +if(Math.abs([B])>0,1,if([B]=0,1,0)) +if(Math.abs([C])>0,1,if([C]=0,1,0)) )