Amino acid residues in peptides and proteins are linked together through a covalent bond called the peptide bond. Two amino acid molecules can be covalently.

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Presentation transcript:

Amino acid residues in peptides and proteins are linked together through a covalent bond called the peptide bond. Two amino acid molecules can be covalently joined through a substituted amide linkage, termed a peptide bond, to yield a dipeptide. Such a linkage is formed by removal of the elements of water (dehydration) from the α-carboxyl group of one amino acid and the α–amino group of another.

Properties of a peptide bond;  The peptide C-N bond is shorter than the single C-N bond in a simple amine, and longer than the C=N bond which indicated a resonance or partial sharing of two pairs of electrons between the carbonyl oxygen and the amide nitrogen (thus the peptide bond has a partial double bond character).

 The peptide bond is unable to rotate freely because of its partial double-bond character,thus the peptide bond is rigid.  Virtually all peptide bonds in proteins occur in the trans configuration.

 The peptide bond can be cleaved (hydrlolyzed) by; 1- chemically ; by the addition of strong acids or strong bases with high temperatures. 2- Enzymatically ; by specific enzymes called the proteases.

Peptides are polymers of amino acids, that are made up of a number of amino acids linked together through a peptide bond. When the peptide molecule is made up of 2-10 amino acids it is called an oligopeptide. When the peptide molecule is made up of amino acids it is called a polypeptide. Peptides found in nature are either products of protein hydrolysis, or biologically active peptides such as Oxytocine a hormone made up of nine amino acid residues, Glucagon another hormone made up of 29 amino acid residues,Glutathione which is a very important antioxidant made up of 3 amino acid residues.

 Amino acids in a peptide are called amino acid residues.  In a peptide the amino acid residue at the end with the free α-amino group is the amino terminal (or N- terminal)residue, the residue at the other end with the free α-carboxyl group is the carboxyl terminal(or C- terminal)residue.  Peptides contain only one free α- amino group and one free α-carboxyl group, one at each end of the chain.  The α-amino and α-carboxyl group of all the other non-terminal residues are covalently joined in the forming of the peptide bond.  The peptide is numbered and named starting from the N-terminal residue. - This is the pentapeptide serylglycyltyrosylalanylleucine. Peptides are named beginning with the amino-terminal residue, which is placed at the left. The peptide bonds are shaded in yellow; the R groups are in red.

 Properties of peptides ; Peptides have properties similar to those of amino acids such as a high melting temperature,they have specific pI values, they have basic and acidic properties, show titration curves similar to amino acids. Acid-Base properties of peptides; Peptide molecules contain only one free α-amino group and one free α-carboxyl group at the terminals,all the other α-amino α-carboxyl groups of the non-terminal amino acids are involved in the peptide bond so they cannot ionize nor contribute to the acid –base behavior of the peptide molecule. However the R-group when containing an ionizable group ( additional carboxyl or amino group) will contribute to the overall acid-base behavior of peptides. Thus the acid-base behavior of a peptide can be predicted from its free α-amino, α- carboxyl group and as well as the ionizable groups of its side chains.

 The net charge on the peptide molecule is determined by the ionizable groups of the N-terminal, C-terminal residues and the ionizable groups of the side chain and the pH of the media.  Peptides have specific pI values.  Peptides show titration curves similar to those of amino acids.  Peptides have a high melting point.

Alanylglutamylglycyllysine. This tetrapeptide has one free -amino group, one free -carboxyl group, and two ionizable R groups. The groups ionized at pH 7.0 are in red. Net charge on this tetrapeptide is (0).