Biological and Chemical Oceanography Data Management Office 1 of 13 An Introduction to the Biological and Chemical Oceanography Data Management Office.

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Presentation transcript:

Biological and Chemical Oceanography Data Management Office 1 of 13 An Introduction to the Biological and Chemical Oceanography Data Management Office (BCO-DMO) Cyndy Chandler BCO-DMO Woods Hole Oceanographic Institution 8 September 2007 GEOTRACES Data-Model Synergy Workshop Delmenhorst, Germany

Biological and Chemical Oceanography Data Management Office 2 of 13 GEOTRACES has been identified as a project that will generate data and results of interest to the scientific community served by the Ocean Carbon & Biogeochemistry Office

Biological and Chemical Oceanography Data Management Office 3 of 13 The Biological and Chemical Oceanography Data Management Office (BCO-DMO) The Office is located at the Woods Hole Oceanographic Institution. The Web-site is: The Office is managed by: Robert Groman Cyndy Chandler David Glover Peter Wiebe The BCO-DMO was initially created in late 2006 to serve PIs funded by the US NSF Biological and Chemical Oceanography Sections. It has since been expanded to serve the data management needs of the Ocean Carbon and Biogeochemistry group of researchers in the US. It is a location from which marine biogeochemical and ecological data and information developed in the course of scientific research can easily be disseminated, protected, and stored on short and intermediate time-frames.

Biological and Chemical Oceanography Data Management Office 4 of 13 the BCO-DMO is a combination of the formerly independent data management offices for US GLOBEC and US JGOFS BCO-DMO will continue to manage the US JGOFS and US GLOBEC data collections as well as data from new programs, including programs associated with the OCB DMO (CARIACO, EDDIES, MedFlux, SOFeX, VERTIGO) The Biological and Chemical Oceanography Data Management Office (BCO-DMO) U.S. JGOFS

Biological and Chemical Oceanography Data Management Office 5 of 13 The BCO-DMO data system will be designed to be interoperable with other data systems to facilitate discovery of and access to ocean science data and supporting documentation. U.S. GEOTRACES U.S. SOLAS The relationship of BCO-DMO to existing and proposed entities.

Biological and Chemical Oceanography Data Management Office 6 of 13 Guiding Principles of Data Management “a stewardship philosophy” quality assurance of data treat all information as data data that lacks sufficient metadata has limited value beyond the research program for which it was collected metadata should include sufficient information to support discovery, value assessment and accurate secondary use (re-use of data) The data collection generated by a research project is a valuable component of its legacy.

Biological and Chemical Oceanography Data Management Office 7 of 13 Important Concepts it’s all data ! decide what metadata is important to support GEOTRACES science store metadata in a database that will enable custom generated lists of selected information, in a variety of formats, and be compatible with various standards … The metadata database will also support data discovery through a robust search interface.

Biological and Chemical Oceanography Data Management Office 8 of 13 Challenges heterogeneity of results... both data type and content type model results...what to preserve ?  description  input  code  results management of full set of results and design of single interface that provides access to all result types

Biological and Chemical Oceanography Data Management Office 9 of 13 a list of all expected results from a sampling program (cruise) that includes PI/co-PI names and brief description of expected measurements for example: PIname: Robert Anderson co-PI: none Measurement: Radionuclide data from bottle samples including: temperature, salinity, thorium-232, thorium-230, protactinium-231 and beryllium-10 Data Inventory

Biological and Chemical Oceanography Data Management Office 10 of 13 Metadata project, people and dataset profiles for example a dataset profile contributed with each data set includes: PI name(s) Affiliation when data collected (e.g. Institution) dataset description: Particulate Organic Matter (POC and PON) project: GEOTRACES platform type (e.g. ship, mooring, satellite) deployment (e.g. cruise ID)

Biological and Chemical Oceanography Data Management Office 11 of 13 Sampling Event Log one event log for each cruise a comprehensive list of uniquely numbered sampling events, including: event number, start and end date and time (in GMT/UTC), time zone, latitude and longitude [decimal degrees], sampling device name or code, person’s name responsible for sampling, station/cast number, comments and optionally including: local date/time, project-specific information GEOTRACES DMC has suggested tagging each sample with a unique sample ID that is a combination of cruise, station, cast and bottle number

Biological and Chemical Oceanography Data Management Office 12 of 13 GEOTRACES Data Management as proposed in the GEOTRACES DMC report (Dec. 2005) oversight of DM is responsibility of DMC and a Data Liaison Officer (located in IPO) reporting to SSC the DLO would be responsible for maintaining lists of GEOTRACES cruises (and contributing projects) and data sets from participating national programs details of BCO-DMO support for US GEOTRACES data management should be worked out in the near future Intercalibration Cruises: present an opportunity to establish best practices for sampling and analytical protocols and also metadata essential to support GEOTRACES science themes

Biological and Chemical Oceanography Data Management Office 13 of 13 Web Resources BCO-DMO US GLOBEC US JGOFS OCB DMO US OCB Thank you !

Biological and Chemical Oceanography Data Management Office 14 of 13 Questions ? Anyone from GEOTRACES attending? September 2007: Shanghai, China IMBER / LOICZ Continental Margins Open Science Conference Abstract submission is closed but registration is still open. Session 1 Ocean-Shelf Biogeochemical Exchanges Session 2 Continental Shelf Biogeochemistry and Couplings with Benthic Systems Session 3 Continental Shelf Carbon in a High CO2 World Session 4 Continental Shelf Ecosystems from High to Low Latitudes Session 5 Integrated Observations and Modeling: Visions and Reality Session 6 Eutrophication and Oligotrophication in Coastal Systems Session 7 Low Oxygen on Continental Shelves Session 8 Sustainable Use of Continental Shelf Resources

Biological and Chemical Oceanography Data Management Office 15 of 13 IMBER / LOICZ Session 5 Session 5) Integrated Observations and Modeling: Visions and Reality Focus: Long time series, remote sensing, and observation systems. New approaches for on-line and synoptic monitoring. Assimilation of these data in multi-dimensional, coupled physical-biological models that address continental shelf processes, cross-shelf exchanges, and shelf break dynamics. Ecosystem models in pursuit of better understanding of human-induced stresses, which compromise biodiversity, ecosystem stability and biogeochemical processes, are sought.

Biological and Chemical Oceanography Data Management Office 16 of 13 Questions ?? What are the key components of data systems that support the modeling effort ?  robust metadata – e.g. sufficient for integration including precision, accuracy, limits of detection  data set sub-setting  download capability  user-selectable formats

Biological and Chemical Oceanography Data Management Office 17 of 13 Technical Details of BCO-DMO Data Management System Goals Generate readily accessible data resource of high quality data (including robust metadata) Maximize data system interoperability BCO-DMO is based at Woods Hole Oceanographic Institution Web access:

Biological and Chemical Oceanography Data Management Office 18 of 13 Technical Details of BCO-DMO Data Management System Metadata profiles and lists research projects identified as being GEOTRACES core projects and related sampling programs (cruises, moorings/sediment traps, lab experiments, remote sensing, observatories?) people profiles (PIs, cruise participants responsible for sampling, data analysts, lab technicians) data set profiles

Biological and Chemical Oceanography Data Management Office 19 of 13 Technical Details of BCO-DMO Data Management System Cruise-specific example O1: report, data set inventory, sampling logs, shipboard data O2: basic hydrography (CTD/Niskin) O3: data sets within 2 years O4: data sets excluded from 2 year contribution target date QC review done on contributed data  according to GEOTRACES standards  in collaboration with originating PI and staff Data and metadata contributed and ingested into BCO-DMO r-DBMS

Biological and Chemical Oceanography Data Management Office 20 of 13 Technical Details of BCO-DMO Data Management System Access to data and results Data access provided in several ways: via any standard Web browser client user interface through a GIS application (Open Source, OGC-compliant MapServer) a directory listing from the data holdings catalog custom search engine that facilitates data discovery  query against variety of fields: PI name, project name, geographic area, temporal range, parameter name Web Services (SOA)

Biological and Chemical Oceanography Data Management Office 21 of 13 Technical Details of BCO-DMO Data Management System Capabilities sample distribution maps (lat/lon station location maps) simple X/Y plots property/property data sub-setting capability (joining, selection and projection) download in variety of user-selectable formats additional functionality to support community/contributing projects generate Summary reports:  data set descriptions generated to comply with a variety of metadata content standards (ISO 19115, DIF (GCMD), EML, FGDC)  data reports on digital media (CD or DVD)  data catalog status reports (inventory) for Special Issue publications (if desired) final data collection contributed to Data Archive Center (*WDC, or *ODC or Data Library)