NATIONAL LIBRARY OF MEDICINE NLM Journal Archiving and Interchange Tagset Jeff Beck National Center for Biotechnology Information National Library of Medicine

NATIONAL LIBRARY OF MEDICINE Who am I? Work at NCBI at the National Library of Medicine Responsible for managing the NLM Journal Archiving and Interchange Tagset Responsible for all text ingested into PubMed Central

NATIONAL LIBRARY OF MEDICINE What is the TagSet? An XML vocabulary for describing journal articles (and books) Four associated Document Type Definitions: Journal Archiving and Interchange DTD Journal Publishing DTD Article Authoring DTD Book DTD

NATIONAL LIBRARY OF MEDICINE What is PubMed Central? Digital archive of life sciences journals includes health policy, bioinformatics and other fields Participation is voluntary and limited to journals: covered by a major abstracting/indexing service, or have 3 editorial board members with current grants from major non-profit funding agencies Journals deposit an authoritative electronic copy that must meet PMC data quality standards Deposits are permanent Copyright retained by publisher or author

NATIONAL LIBRARY OF MEDICINE What else is PubMed Central? PMC is also the repository for manuscripts collected through the NIH Public Access Policy “The Public Access Policy requests that investigators funded by the National Institutes of Health (NIH) submit an electronic version of their final, peer-reviewed manuscripts upon acceptance for publication to the NIH National Library of Medicine's PubMed Central (PMC). “

NATIONAL LIBRARY OF MEDICINE PMC Workflow

NATIONAL LIBRARY OF MEDICINE is a child of Attributes of interest: license-type – Used to indicate the type of license involved xlink:href – Provides an address or identifier that permits an XLink application to find a remote resource xlink:title - Describes the function of a link’s remote resource in human-readable fashion

NATIONAL LIBRARY OF MEDICINE is a child of Attributes of interest: license-type – Used to indicate the type of license involved xlink:href – Provides an address or identifier that permits an XLink application to find a LICENSE xlink:title - Describes the LICENSE in human-readable fashion

NATIONAL LIBRARY OF MEDICINE in action This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

NATIONAL LIBRARY OF MEDICINE in action This article is in the public domain.

NATIONAL LIBRARY OF MEDICINE Is PMC doing this now? No. We are not making determinations in the PubMed Central project if a work is a Government Work or not. Because we receive content that has been created elsewhere, some (serious) analysis is required to make the determination, and the answer is not always straightforward.

NATIONAL LIBRARY OF MEDICINE Indexing The MEDLINE indexing team is marking government works with these MeSH headings: RESEARCH SUPPORT, N.I.H, EXTRAMURAL RESEARCH SUPPORT, N.I.H., INTRAMURAL RESEARCH SUPPORT, U.S. GOV'T, P.H.S RESEARCH SUPPORT, U.S. GOV'T, NON-P.H.S. Currently all MEDLINE records are available free from PubMed.

NATIONAL LIBRARY OF MEDICINE The Challenges 1.Content will need to be identified as a government work at Content Creation. 2.This identifier must be required to remain on all forms of the work. Only then can an aggregator like PubMed Central or any content-delivery system reliably make decisions for unrestricted access to this content.

NATIONAL LIBRARY OF MEDICINE Links PubMed Central – NLM DTDs and documentation