Electrosensory data acquisition and signal processing strategies in electric fish Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Slides:



Advertisements
Similar presentations
What is the neural code? Puchalla et al., What is the neural code? Encoding: how does a stimulus cause the pattern of responses? what are the responses.
Advertisements

Lecture 20 Dimitar Stefanov. Microprocessor control of Powered Wheelchairs Flexible control; speed synchronization of both driving wheels, flexible control.
Important requirements for JAR: 1.Absolute value of the difference in frequency less than 20 Hz 2. Mixing of signals 3. Variation in mixing ratio 4. Modulation.
Breaking the Frame David Luebke University of Virginia.
Exploring Magnetoencephalography (MEG) Data Acquisition and Analysis Techniques Rosalia F. Tungaraza, Ph.D. Anthony Kelly, B.A. Ajay Niranjan, M.D., MBA.
Biological Modeling of Neural Networks: Week 9 – Coding and Decoding Wulfram Gerstner EPFL, Lausanne, Switzerland 9.1 What is a good neuron model? - Models.
Sensorimotor Transformations Maurice J. Chacron and Kathleen E. Cullen.
APA 6905 INSTRUMENTATION FOR RESEARCH IN MOVEMENT SCIENCE SCHOOL OF HUMAN KINETICS Mario Lamontagne PhD Vicon Calibration David Groh University of Nevada.
The Use of Surface Electromyography in Biomechanics by Carlo De Luca
Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.
FMRI Signal Analysis Using Empirical Mean Curve Decomposition Fan Deng Computer Science Department The University of Georgia Introduction.
Patch to the Future: Unsupervised Visual Prediction
Semi-Supervised Hierarchical Models for 3D Human Pose Reconstruction Atul Kanaujia, CBIM, Rutgers Cristian Sminchisescu, TTI-C Dimitris Metaxas,CBIM, Rutgers.
Neuromorphic Engineering
1 Eigenmannia: Glass Knife Fish A Weakly Electric Fish Electrical organ discharges (EODs) – Individually fixed between 250 and 600 Hz –Method of electrolocation.
Contours and Optical Flow: Cues for Capturing Human Motion in Videos Thomas Brox Computer Vision and Pattern Recognition Group University of Bonn Research.
On the use of hierarchical prediction structures for efficient summary generation of H.264/AVC bitstreams Luis Herranz, Jose´ M. Martı´nez Image Communication.
Electroreception Electric field properties Electroreception
1 MURI review meeting 09/21/2004 Dynamic Scene Modeling Video and Image Processing Lab University of California, Berkeley Christian Frueh Avideh Zakhor.
Boğaziçi University SCIENCE 102: Sensory Systems Yrd.Doç.Dr. Burak Güçlü Biomedical Engineering Institute.
Xinqiao LiuRate constrained conditional replenishment1 Rate-Constrained Conditional Replenishment with Adaptive Change Detection Xinqiao Liu December 8,
Real Time Abnormal Motion Detection in Surveillance Video Nahum Kiryati Tammy Riklin Raviv Yan Ivanchenko Shay Rochel Vision and Image Analysis Laboratory.
Jason Li Jeremy Fowers Ground Target Following for Unmanned Aerial Vehicles.
ECE 472/572 – Digital Image Processing Lecture 2 – Elements of Visual Perception and Image Formation 08/25/11.
Kalman filter and SLAM problem
An Integrated Model of Decision Making and Visual Attention Philip L. Smith University of Melbourne Collaborators: Roger Ratcliff, Bradley Wolfgang.
Automated Data Acquisition for an Infrared Spectrometer Lauren Foster 1, Obadiah Kegege 2, and Alan Mantooth 2,3 1 Manhattan College, Bronx, NY, 2 Arkansas.
Extracting Time and Space Scales with Feedback and Nonlinearity André Longtin Physics + Cellular and Molecular Medicine CENTER FOR NEURAL DYNAMICS UNIVERSITY.
Introduction to Computational Photography. Computational Photography Digital Camera What is Computational Photography? Second breakthrough by IT First.
Sensory Physiology Sections Regulatory Mechanism Sensor Controller Effector (Feedback)
Mining Discriminative Components With Low-Rank and Sparsity Constraints for Face Recognition Qiang Zhang, Baoxin Li Computer Science and Engineering Arizona.
Use and Re-use of Facial Motion Capture M. Sanchez, J. Edge, S. King and S. Maddock.
Active Vision Key points: Acting to obtain information Eye movements Depth from motion parallax Extracting motion information from a spatio-temporal pattern.
KinectFusion : Real-Time Dense Surface Mapping and Tracking IEEE International Symposium on Mixed and Augmented Reality 2011 Science and Technology Proceedings.
The search for organizing principles of brain function Needed at multiple levels: synapse => cell => brain area (cortical maps) => hierarchy of areas.
Exploitation of 3D Video Technologies Takashi Matsuyama Graduate School of Informatics, Kyoto University 12 th International Conference on Informatics.
2 2  Background  Vision in Human Brain  Efficient Coding Theory  Motivation  Natural Pictures  Methodology  Statistical Characteristics  Models.
Whisking with Robots – From Rat Vibrissae to Biomimetic Technology for Active Touch Tony J. Prescott, Martin J. Pearson, Ben Mitchinson, J. Charles W.
Probabilistic Robotics Bayes Filter Implementations Gaussian filters.
Correlation-Induced Oscillations in Spatio-Temporal Excitable Systems Andre Longtin Physics Department, University of Ottawa Ottawa, Canada.
Particle Filters.
Design constraints for an active sensing system Insights from the Electric Sense Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.
Learning sensorimotor transformations Maurice J. Chacron.
Biomedical Sciences BI20B2 Sensory Systems Human Physiology - The basis of medicine Pocock & Richards,Chapter 8 Human Physiology - An integrated approach.
Evolvability and Sensor Evolution University of Birmingham 25 April 2003 Electroreception: Functional, evolutionary and information processing perspectives.
Department of Aerospace Engineering and Mechanics, Hydrodynamic surface interactions of Escherichia coli at high concentration Harsh Agarwal, Jian Sheng.
Andre Longtin Physics Department University of Ottawa Ottawa, Canada Effects of Non-Renewal Firing on Information Transfer in Neurons.
University of California, Santa Barbara An Integrated System of 3D Motion Tracker and Spatialized Sound Synthesizer John Thompson (Music) Mary Li (ECE)
Neurons and Neurotransmitters. Nervous System –Central nervous system (CNS): Brain Spinal cord –Peripheral nervous system (PNS): Sensory neurons Motor.
Segmentation of Vehicles in Traffic Video Tun-Yu Chiang Wilson Lau.
Learning video saliency from human gaze using candidate selection CVPR2013 Poster.
Target Tracking In a Scene By Saurabh Mahajan Supervisor Dr. R. Srivastava B.E. Project.
Spatial Point Processes Eric Feigelson Institut d’Astrophysique April 2014.
Neural Networks for EMC Modeling of Airplanes Vlastimil Koudelka Department of Radio Electronics FEKT BUT Metz,
HKIN 473 Recording Motor Units. Recording Electrical Signals Muscle fiber sarcolemma action potential is very small ~ 1 millivolt. Therefore, to be able.
Gait Recognition Gökhan ŞENGÜL.
Reconstruction For Rendering distribution Effect
Spatially Varying Frequency Compounding of Ultrasound Images
Generalized Principal Component Analysis CVPR 2008
MURI Annual Review Meeting Randy Moses November 3, 2008
EPS Sensors & Hand Tracking/Gesture Recognition
Signal, Noise, and Variation in Neural and Sensory-Motor Latency
Department of Electrical Engineering
Feedback Synthesizes Neural Codes for Motion
Uri Hasson, Michal Harel, Ifat Levy, Rafael Malach  Neuron 
Volume 66, Issue 4, Pages (May 2010)
M/EEG Statistical Analysis & Source Localization
Mapping and Cracking Sensorimotor Circuits in Genetic Model Organisms
Higher-Order Figure Discrimination in Fly and Human Vision
Jan Benda, André Longtin, Leonard Maler  Neuron 
Presentation transcript:

Electrosensory data acquisition and signal processing strategies in electric fish Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign

How Electric Fish Work

Distribution of Electric Fish Fish tank upstairs black ghost knifefish elephant- nose fish

Electric Organ Discharge (EOD) - Spatial

EOD - Temporal

Electric Organ Discharge (EOD)

Principle of active electrolocation

mechano MacIver, from Carr et al., 1982 Electroreceptors ~15,000 tuberous electroreceptor organs 1 nerve fiber per electroreceptor organ up to 1000 spikes/s per nerve fiber

Individual Sensors (Electroreceptors)  V IN nerve spikes OUT

Neural coding in electrosensory afferent fibers

Probability coding (P-type) afferent spike trains P head =  P head  = P head = 0.333

Principle of active electrolocation

Electrosensory Image Formation

Prey-capture video analysis

Prey capture behavior

Fish Body Model

Motion capture software

MOVIE: prey capture behavior

Electrosensory Image Reconstruction

Voltage perturbation at skin  : Estimating Daphnia signal strength electrical contrast prey volume fish E-field at prey distance from prey to receptor THIS FORMULA CAN BE USED TO COMPUTE THE SIGNAL AT EVERY POINT ON THE BODY SURFACE

MOVIE: Electrosensory Images

System Capabilities Electric fish can analyze electrosensory images to extract information on target direction (bearing) distance size shape composition (impedance)

Distance Discrimination

Shape Discrimination

Shape Generalization

Shape “completion”

Impedance Discrimination

How Do They Do It? Electric fish analyze dynamic 2D electrosensory images on the body surface to determine target direction, distance, size, shape and composition (impedance) Fish might perform an inverse mapping from 2D sensor data to obtain a dense 3D neural representation of world conductivity sensor data  3D conductivity  action Alternatively, fish might use sensor data to directly estimate target parameters sensor data  target parameters  action

Parameter estimation (bearing)

Parameter Estimation (cont.)

Dynamic Movement Strategies Fish are constantly in motion not a single, static ‘snapshot’ dynamic, spatiotemporal data stream With respect to target objects in the environment, fish body movements simultaneously influence the relative positioning of the sensor array the electric organ effector organs (e.g. mouth)

MOVIE: Electrosensory Images

Active motor strategies: Dorsal roll toward prey

Probing Motor Acts chin probing back-and-forth (va et vient ) lateral probing tangential probing stationary probing

Fish exploring a 4 cm cube

CNS Signal Processing Strategies Multi-scale filtering spatial and temporal Adaptive background subtraction tail-bend suppression Attentional ‘spotlight’ mechanisms local gain control

Multiple Maps

Multi-scale Filtering INPUT (from skin receptors) Centromedial map High spatial acuity Low temporal acuity Centrolateral map Inter spatial acuity Inter temporal acuity Lateral map Low spatial acuity High temporal acuity temporal integration both spatial integration HINDBRAIN PROCESSING PERIPHERAL SENSORS

Adaptive Background Subtraction

Attentional ‘spotlight’ mechanism

Summary Fish can evaluate direction, distance, size, shape and composition of target objects How? model-based parameter estimation based on 2D image analysis, not full 3D reconstruction presumably some sort of (adaptive) (extended) (unscented) Kalman-like algorithm extensive pre-filtering (virtual sensors?)  self-calibrating, adaptive noise suppression, multi- scale spatial and temporal signal averaging dynamic control of source and array position

Acknowledgements Colleagues Curtis Bell (OHSU) Len Maler (Univ. Ottawa) Gerhard von der Emde (Univ. Bonn) Nelson Lab Members Ling Chen, Rüdiger Krahe, Malcolm MacIver Funding Agencies NIMH, NSF