A Worldwide e-Infrastucture for NMR and structural biology Project Coordinator: Prof. Alexandre M.J.J. Bonvin, Utrecht University, NL

Slides:



Advertisements
Similar presentations
E-NMR (RI ) is funded by the European Commission under the Research Infrastructure Programme The e-NMR project: deploying and unifying.
Advertisements

Gaetano Maron, Information Event, Brussel May GRIDCC A realtime interactive GRID to integrate instruments, computational and information resources.
Jorge Gasós Grid Technologies Unit European Commission The EU e Infrastructures Programme Workshop, Beijing, June 2005.
LIBER Annual Conference, 2008, Istanbul 1 LIBER 37th Annual Conference, Istanbul, 3 July 2008 DRIVER: Building a sustainable infrastructure of (European)
SPARC, Baltimore, 17/18 Nov SPARC Digital Repositories Meeting 2008 DRIVER: Open Access to Information through Digital Repository Networks in Europe.
DRIVER Building a worldwide scientific data repository infrastructure in support of scholarly communication 1 JISC/CNI Conference, Belfast, July.
Research Infrastructures WP 2012 Call 10 e-Infrastructures part Topics: Construction of new infrastructures (or major upgrades) – implementation.
Delivery of industrial-strength Grid middleware: Establishing an effective European approach Professor Yike Guo Imperial College London, UK & InforSense.
An open source approach for grids Bob Jones CERN EU DataGrid Project Deputy Project Leader EU EGEE Designated Technical Director
DRIVER Step One towards a Pan-European Digital Repository Infrastructure Norbert Lossau Bielefeld University, Germany Scientific coordinator of the Project.
9 th International Bielefeld Conference, 3-5 February 2009 The impact of DRIVER on the repository community Sophia Jones.
Fighting Malaria With The Grid. Computing on The Grid The Internet allows users to share information across vast geographical distances. Using similar.
Research Councils ICT Conference Welcome Malcolm Atkinson Director 17 th May 2004.
Web: OMII-UK Delivering Software and Social Platforms for Successful Research RCUK Review of e-Science, 8 December.
1 IDGF-SP International Desktop Grid Federation - Support Project Overview London, UK, 26/9/2012 Robert Lovas, MTA SZTAKI - Project coordinator IDGF-SP.
1 ICT R&D&Innovation in Europe A market of more than 660 Billion Euro –Largest market world wide, (~34%) EU produces 23% of the world ICT value added –ICT,
1 Ideas About the Future of HPC in Europe “The views expressed in this presentation are those of the author and do not necessarily reflect the views of.
ER-flow Purpose of the meeting C. Vuerli Contributions by G. Terstyanszky.
“Scientific software is an essential integral part of the European Cyber infrastructure” There are facilities for Neutrons, X-rays, NMR that are maintained;
The LHC Computing Grid – February 2008 The Worldwide LHC Computing Grid Dr Ian Bird LCG Project Leader 15 th April 2009 Visit of Spanish Royal Academy.
Bioinformatics Grid Application for Life Science. COMMUNICATION NETWORK DEVELOPMENT SPECIFIC SUPPORT ACTION BIOINFOGRID Luciano Milanesi CNR-ITB.
Research Infrastructures in Structural Biology and Framework Programme 7 The role of NMR Lucia Banci CERM, Florence, Italy
OpenAIRE: Open Access Infrastructure for Research in Europe Wolfram Horstmann Bielefeld University, Germany
08/11/908 WP2 e-NMR Grid deployment and operations Technical Review in Brussels, 8 th of December 2008 Marco Verlato.
European Life Sciences Infrastructure for Biological Information ELIXIR
The OpenAIRE Project Open Access Infrastructure for Research in Europe Stefania Biagioni, Donatella Castelli, Paolo Manghi CNR - ISTI GL11 - Library of.
Research Infrastructures in Structural Biology - NMR Lucia Banci CERM, Florence, Italy Workshop "Future Needs for Research Infrastructures.
What is OMII-Europe? Qin Li Beihang University. EU project: RIO31844-OMII-EUROPE 1 What is OMII-Europe? Open Middleware Infrastructure Institute for Europe.
INFSO-RI Enabling Grids for E-sciencE GLOBAL GRID USER SUPPORT THE MODEL AND EXPERIENCE IN LCG/EGEE Gilles Mathieu(1), Torsten Antoni(2),
From GEANT to Grid empowered Research Infrastructures ANTONELLA KARLSON DG INFSO Research Infrastructures Grids Information Day 25 March 2003 From GEANT.
The Knowledge Exchange Presentation to CNI April 2005 Bas Cordewener, SURF Sigrun Eckelmann, DFG Norman Wiseman, JISC.
INFSO-RI Enabling Grids for E-sciencE V. Breton, 30/08/05, seminar at SERONO Grid added value to fight malaria Vincent Breton EGEE.
DataTAG Research and Technological Development for a Transatlantic Grid Abstract Several major international Grid development projects are underway at.
EGEE-III INFSO-RI Enabling Grids for E-sciencE EGEE and gLite are registered trademarks Steven Newhouse Technical Director CERN.
 Our mission Deploying and unifying the NMR e-Infrastructure in System Biology is to make bio-NMR available to the scientific community in.
Les Les Robertson LCG Project Leader High Energy Physics using a worldwide computing grid Torino December 2005.
A worldwide e-Infrastructure for NMR and structural biology A worldwide e-Infrastructure for NMR and structural biology Introduction Structural biology.
Project Overview Dr Fredrik Hedman Royal Institute of Technology (PDC/KTH)
FP6−2004−Infrastructures−6-SSA EUChinaGrid status report Giuseppe Andronico INFN Sez. Di Catania CERN – March 3° 2006.
Structural Biology on the GRID Dr. Tsjerk A. Wassenaar Biomolecular NMR - Utrecht University (NL)
EGEE-III INFSO-RI Enabling Grids for E-sciencE EGEE and gLite are registered trademarks EGI Operations Tiziana Ferrari EGEE User.
National e-Science Institute and National e-Science Centre The Way Ahead Prof. Malcolm Atkinson Director 30 th September 2003.
7 September 2007 AEGIS 2007 Annual Assembly Current Status of Serbian eInfrastructure: AEGIS, SEE-GRID-2, EGEE-II Antun Balaz SCL, Institute of Physics,
Building an European Research Community through Interoperable Workflows and Data ER-flow project Gabor Terstyanszky, University of Westminster, UK EGI.
EGEE-III INFSO-RI Enabling Grids for E-sciencE EGEE08 conference, Istambul Life sciences cluster perspective on EGI V. Breton, CNRS On.
EUChinaGRID project Federico Ruggieri INFN – Sezione di Roma3 EGEE04 - External Projects Integration Session Pisa 25 October 2005.
Extending WeNMR e-Infrastructure outside Europe Marco Verlato INFN (National Institute of Nuclear Physics) Division of Padova Italy
The WeNMR HADDOCK portal goes crowd computing Alexandre M.J.J. Bonvin Project coordinator Bijvoet Center for Biomolecular Research Faculty of Science,
Northwest Indiana Computational Grid Preston Smith Rosen Center for Advanced Computing Purdue University - West Lafayette West Lafayette Calumet.
Update report Marco Verlato INFN (National Institute of Nuclear Physics) Division of Padova Italy CHAIN Workshop, Taipei, Taiwan,
The WeNMR VRC: operating a worldwide e-Infrastructure for structural biology Marco Verlato INFN (National Institute of Nuclear Physics) Division of Padova.
A worldwide e-Infrastructure and Virtual Research Community for NMR and structural biology Alexandre M.J.J. Bonvin Project coordinator Bijvoet Center for.
Structural Biology on the Grid Christophe Schmitz Bijvoet Center for Biomolecular Research Faculty of Science, Utrecht University The Netherlands
DutchGrid KNMI KUN Delft Leiden VU ASTRON WCW Utrecht Telin Amsterdam Many organizations in the Netherlands are very active in Grid usage and development,
Requirements from the WeNMR VRC User Forum 2011, Vilnius Workshop.
BioExcel - Intro Erwin Laure, KTH. PDC Center for High Performance Computing BioExcel Consortium KTH Royal Institute of Technology – Sweden University.
Toward an open-data infrastructure for WeNMR and structural biology-related services Alexandre M.J.J. Bonvin WeNMR Project coordinator Bijvoet Center for.
An short overview of INSTRUCT and its computational requirements Alexandre M.J.J. Bonvin Project coordinator Bijvoet Center for Biomolecular Research Faculty.
A Competence Center to Serve Translational Research from Molecule to Brain Alexandre M.J.J. Bonvin MoBrain CC coordinator Bijvoet Center for Biomolecular.
WeNMR Operations Report Marco Verlato INFN (National Institute of Nuclear Physics) Division of Padova Italy EGI Community Forum.
Bob Jones EGEE Technical Director
Accessing the VI-SEEM infrastructure
INFN Grid - Referee meeting Bologna, 25 July 2008
September 19th-23th, Lyon, France
Marc van Dijk | WeNMR | StickyBits
Alexandre M.J.J. Bonvin MoBrain CC coordinator
GRENA Participation in European Commission Projects
Supporting user communities across EGI and OSG: the WeNMR use case
DEGISCO project - Desktop Grids for application developers and users
EUChinaGRID Federico Ruggieri INFN Roma3
Presentation transcript:

A Worldwide e-Infrastucture for NMR and structural biology Project Coordinator: Prof. Alexandre M.J.J. Bonvin, Utrecht University, NL Contract n°: RI Project type: CP-CSA Duration: 36 months Total budget:2’434’000 € EC Funding: 2’150’000 € Utrecht University, Bijvoet Center for Biomolecular Research, NL Johann Wolfgang Goethe Universität Frankfurt a.M., Center for Biomolecular Magnetic Resonance DE University of Florence, Magnetic Resonance Center, IT Istituto Nazionale di Fisica Nucleare, Padova, IT Raboud University, Nijmegen, NL University of Cambridge UK European Molecular Biology Laboratory, Hamburg, DE Spronk NMR Consultancy, LT The team

# Number of dimensions 2 # INAME 1 1H # INAME 2 1H T 0.000e e T 0.000e e T 0.000e e T 0.000e e T 0.000e e T 0.000e e T 0.000e e T 1.035e e+00 r T 0.000e e assign ( resid 501 and name OO ) ( resid 501 and name Z ) ( resid 501 and name X ) ( resid 501 and name Y ) ( resid 2 and name CA ) assign ( resid 501 and name OO ) ( resid 501 and name Z ) ( resid 501 and name X ) ( resid 501 and name Y ) ( resid 3 and name CA ) Data interpretation Structure, dynamics & interactions  impact on research and health: - origin of disease - design of new experiments - drug design… - drug design… Exploiting GRID resources in structural biology… Computations NMR data collection and processing SAXS data analysis

Operate and further develop a user-friendly e-Science gateway for the NMR and SAXS communities Establish a virtual research platform for (interaction with) the user community Provide support to software developers, users and other e- Infrastructure projects Foster the adoption and use of e-Infrastructure in a wide range of flanking disciplines within the life sciences Operate and consolidate the eNMR Grid infrastructure and to extend it to interoperate with other worldwide Grid initiatives Develop a model to ensure sustainability of the project Main objectives

Builds upon the eNMR project “Deploying and unifying the NMR e-Infrastructure in System Biology” haddock.chem.uu.nl/enmr/eNMR-portal.html e-NMR allows researchers to enjoy all of the benef"its of bio-NMR with only minimal efforts for the set-up of data analysis & calculations. Johann Wolfgang Goethe Universität Frankfurt a.M., Germany, Center for Biomolecular Magnetic Resonance University of Florence, Magnetic Resonance Center, Italy. Subcontractor: Spronk NMR, Vilnius, Lithuania Utrecht University, The Netherlands- Bijvoet Center for Biomolecular Research. Subcontractor: CNRS Lyon European Bioinformatics Institute, Hinxton, UK Istituto Nazionale di Fisica Nucleare, Padova, Italy The e-NMR web portal is accessible through the web and exploits GRID technology to provide users with high computational capacity and a secure protocol for access The team:

eNMR platform operational and well used! 2 nd largest VO in the life sciences Over 230 registered users and growing >16000 CPUs >350 CPU years over the last 12 months 20% of Life Sciences on the Grid User-friendly access to e-Infrastructure via web portals

Objectives

The future… a global virtual research community

wordle.net