Arjun Raj, Alexander van Oudenaarden  Cell 

Slides:



Advertisements
Similar presentations
Aurora Kinases and Protein Phosphatase 1 Mediate Chromosome Congression through Regulation of CENP-E Yumi Kim, Andrew J. Holland, Weijie Lan, Don W. Cleveland.
Advertisements

Individualized Medicine from Prewomb to Tomb Eric J. Topol Cell Volume 157, Issue 1, Pages (March 2014) DOI: /j.cell Copyright.
What We Talk About When We Talk About Fat Evan D. Rosen, Bruce M. Spiegelman Cell Volume 156, Issue 1, Pages (January 2014) DOI: /j.cell
Signal Processing in Single Cells Tony 03/30/2005.
Transcriptional Control of Gene Expression by MicroRNAs Basel Khraiwesh, M. Asif Arif, Gotelinde I. Seumel, Stephan Ossowski, Detlef Weigel, Ralf Reski,
Common Sense about Taste: From Mammals to Insects David A. Yarmolinsky, Charles S. Zuker, Nicholas J.P. Ryba Cell Volume 139, Issue 2, Pages (October.
By Rosalind Allen Regulatory networks Biochemical noise.
Eph-Ephrin Bidirectional Signaling in Physiology and Disease Elena B. Pasquale Cell Volume 133, Issue 1, Pages (April 2008) DOI: /j.cell
Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome Corinne Ferrier Maurice, Henry Joseph Haiser, Peter James Turnbaugh.
Nuclear Receptors, RXR, and the Big Bang Ronald M. Evans, David J. Mangelsdorf Cell Volume 157, Issue 1, Pages (March 2014) DOI: /j.cell
Transmembrane Receptor DCC Associates with Protein Synthesis Machinery and Regulates Translation Joseph Tcherkezian, Perry A. Brittis, Franziska Thomas,
Noise and Variability in Gene Expression Presenting: Tal Ashuah Advisor: Dr. Alon Zaslaver 10/05/15.
Design and Analysis of Single-Cell Sequencing Experiments
Protein Accounting in the Cellular Economy
Volume 31, Issue 4, Pages (November 2014)
A Pro-metastatic tRNA Pathway
Central Dogma Goes Digital
PDF Has Found Its Receptor
A Blend of Two Circadian Clocks, Seasoned to Perfection
A New Twist on Transcriptional Bursting
Screening for Novel Regulators of Embryonic Stem Cell Identity
T Helper 17 Cells Get the NOD
Wing Y. Chang, William L. Stanford  Cell Stem Cell 
Passive Noise Filtering by Cellular Compartmentalization
William J. Blake, James J. Collins  Cell 
Wenlian Qiao, Peter W. Zandstra  Cell Stem Cell 
Screening for Novel Regulators of Embryonic Stem Cell Identity
Chinmo and Neuroblast Temporal Identity
In This Issue Cell Volume 158, Issue 5, (August 2014)
Protein Accounting in the Cellular Economy
PU.1 Takes Control of the Dendritic Cell Lineage
Fragile X Tremor/Ataxia Syndrome: Blame the Messenger!
Codon Clarity or Conundrum?
Jan Philipp Junker, Alexander van Oudenaarden  Molecular Cell 
Impulse Control: Temporal Dynamics in Gene Transcription
Suzanne Komili, Natalie G. Farny, Frederick P. Roth, Pamela A. Silver 
The Importance of Timing
HMGA2, MicroRNAs, and Stem Cell Aging
Imaging the Neural Basis of Locomotion
Passive Noise Filtering by Cellular Compartmentalization
Rewriting the Epigenome
Volume 152, Issue 1, (January 2013)
Andreas Hilfinger, Thomas M. Norman, Johan Paulsson  Cell Systems 
Translational Control by the Eukaryotic Ribosome
Gene Regulation: Stable Noise
The Ribosome Emerges from a Black Box
Volume 130, Issue 6, (September 2007)
Gene Regulation: Hacking the Network on a Sugar High
Jan Philipp Junker, Alexander van Oudenaarden  Cell 
Phytochromes: Where to Start?
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
Singular Expression of Olfactory Receptor Genes
Modeling Transcriptome Dynamics in a Complex World
Picking Pyknons out of the Human Genome
Easy Stress Relief by EZH2
Volume 143, Issue 6, (December 2010)
m6A mRNA Methylation: A New Circadian Pacesetter
Chromatin Dynamics and Gene Positioning
Dale Muzzey, Alexander van Oudenaarden  Cell 
Polycomb Repression under the Skin
The Plasticity of Aging: Insights from Long-Lived Mutants
Monitoring Tissue Regeneration at Single-Cell Resolution
Volume 163, Issue 4, (November 2015)
Volume 163, Issue 2, (October 2015)
On the Dependency of Cellular Protein Levels on mRNA Abundance
Volume 134, Issue 6, (September 2008)
Volume 12, Issue 6, Pages (December 2007)
In This Issue Cell Volume 145, Issue 3, (April 2011)
Volume 148, Issue 1, (January 2012)
Targeting Protein Stability with a Small Molecule
Presentation transcript:

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences  Arjun Raj, Alexander van Oudenaarden  Cell  Volume 135, Issue 2, Pages 216-226 (October 2008) DOI: 10.1016/j.cell.2008.09.050 Copyright © 2008 Elsevier Inc. Terms and Conditions

Figure 1 Intrinsic and Extrinsic Contributions to Noise in Gene Expression (A) A fluorescence image of individual E. coli displaying marked cell-to-cell variability in the expression of two identically regulated fluorescent proteins. (B) Schematic depiction of the temporal behaviors of extrinsic noise (upper) and intrinsic noise (lower). (C) Expected cell-to-cell variations when fluctuations are intrinsic, extrinsic or both. (A) and (B) are adapted from Elowitz et al., 2002. Cell 2008 135, 216-226DOI: (10.1016/j.cell.2008.09.050) Copyright © 2008 Elsevier Inc. Terms and Conditions

Figure 2 Noise in Prokaryotic Gene Expression Depends on the Rates of Transcription and Translation When the transcription rate is high, variability in protein levels is low (A), but when the transcription rate is lowered and the translation rate is raised, gene expression is far noisier (B), even at the same mean, as shown in Ozbudak et al. (2002). Cell 2008 135, 216-226DOI: (10.1016/j.cell.2008.09.050) Copyright © 2008 Elsevier Inc. Terms and Conditions

Figure 3 The Contribution of Transcriptional Bursts to Cell-to-Cell Variability (A) Transcription without bursts with a relatively small amount of noise. (B) Bursts in transcription can cause significantly higher variability, even when producing the same mean number of transcripts. (C) In situ detection of individual mRNA molecules reveals large cell-to-cell variability in mammalian cells. (D) Experimental histogram of mRNA numbers. The gray dashed line depicts the theoretical distribution one would expect in the absence of transcriptional bursts. (C) and (D) are adapted from Raj et al., 2006. Cell 2008 135, 216-226DOI: (10.1016/j.cell.2008.09.050) Copyright © 2008 Elsevier Inc. Terms and Conditions