Positions of LSUCC isolates relative to matching OTUs within the top 60 ranks for the most successful experiment, CJ2, which is enlarged to allow for OTU.

Slides:

Advertisements

Similar presentations

..,../' CJ " · "' ; '..

Advertisements

Long-chain fatty acids are less abundant in the cecal contents of coconut oil-fed mice than in the cecal contents of beef tallow-fed mice. Long-chain fatty.

Table S1: Chemical analysis and bacterial abundance of ice meltwater from EME and DLE Lee et al, Supporting Online Material.

Taxonomic composition of subway microbial communities.

Exploration of the data set with age as a continuous variable.

-,-, '.-.- ·'·' '·..'·..... '-.: - - (p - C!J " 1.,.c_.. If ( '.. ' " ' ' " ' I.

Fig. 4 Bacterial taxonomic groups that discriminate among RYGB-, SHAM-, and WMS-derived samples. Bacterial taxonomic groups that discriminate among RYGB-,

Fig. 3. Antimicrobial activity is detected in diverse strains of CoNS and not predictable at the species level. Antimicrobial activity is detected in diverse.

Relative abundances of the top 10 most abundant OTUs across all fish samples are shown along with the data from the probiotic B. pumilus RI06-95 (OTU 3673)

Effect of protocol modifications.

Comparison of DNA extraction methods.

MFS1 expression in Z. tritici field isolates with different promoter genotypes. MFS1 expression in Z. tritici field isolates with different promoter genotypes.

Antimicrobial zone of inhibition.

Differential abundance of bacterial families.

Family level bar plots generated in QIIME 1. 9

Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. Phylogeny of Shiga toxin-encoding phage from SDi/SJo S. sonnei isolates. (A) progressiveMauve.

Relative abundance of proteins identified in MALDI IMS

Heatmaps of differential OTUs

Relative abundances of dominant phyla in each treatment and indicator genera in PyOM300, PyOM700, and control soils. Relative abundances of dominant phyla.

Differential relative abundance of major taxa for successive pairwise comparisons. Differential relative abundance of major taxa for successive pairwise.

Polymorphism discovery in 09-CB1 × IPO323 versus 09-ASA-3apz × IPO94269 bulks. Polymorphism discovery in 09-CB1 × IPO323 versus 09-ASA-3apz × IPO94269.

The virulence of Candida species in Galleria mellonella larvae at 37°C is species specific. The virulence of Candida species in Galleria mellonella larvae.

Protein sequence alignments for the BcfD (A) and StfH (B) allelic groups from S. Newport. Protein sequence alignments for the BcfD (A) and StfH (B) allelic.

Cecal metabolome during C. difficile colonization and infection.

KEGG pathway analysis of the C

Relative ITS2 abundance of Saccharomyces in stool over time as a Saccharomyces cerevisiae-free diet was consumed. Relative ITS2 abundance of Saccharomyces.

Aboveground and belowground samples showed differences in their bacterial community structures and compositions, while bulk soil and root communities differed.

Study design and taxonomic composition of vaginal fluid metatranscriptomes in BV during and after treatment with metronidazole. Study design and taxonomic.

PVM candidates with a signal peptide and/or at least one transmembrane domain. PVM candidates with a signal peptide and/or at least one transmembrane domain.

Spearman correlation of normalized relative abundances between MAGs from TBE6 and taxa in the epilimnion of the environment of origin (Trout Bog Lake).

Log2-fold change in relative abundance of differentially abundant OTUs in PyOM300 and PyOM700 (a and b) and in Ps soil and Ar soil (c and d). Log2-fold.

Compositional PCA plot of samples (A) and OTU loadings (B) for the initial data set. Compositional PCA plot of samples (A) and OTU loadings (B) for the.

Co-occurrence network in tongue microbiota of 506 elderly adults built from SparCC correlation coefficients between sequence abundances. Co-occurrence.

Dynamic ranges of anti-PnPS IgG Reference standard serum 007sp for each of 13 serotypes. Dynamic ranges of anti-PnPS IgG Reference standard serum 007sp.

(A) Taxonomic identity at the phylum level of raw leachate (RL) and enrichment microcosms (E) as determined via Ion Torrent 16S rRNA gene amplicon sequencing.

Phenotypic consequences of the most common rpoB mutants.

Differentially abundant OTUs and higher taxonomic units across geography and diet. Differentially abundant OTUs and higher taxonomic units across geography.

Relative abundances of microeukaryotic taxa detected by ITS2 analysis of DNA or cDNA from stool. Relative abundances of microeukaryotic taxa detected by.

Relative abundance (RA) of individual phyla that are strongly correlated (|rs| = >0.6; q =

Principal-coordinate analysis done for the taxonomy profiling results of all the samples, with the Russian (solid dots) and Finnish (open circles) groups.

Relationship between relative abundance and transcription/abundance ratio (logarithmic scales) of OTUs (brown), ZOTUs (turquoise), and population genomes.

TEM observation of the bacterial damage caused by egg white.

Minor variants expand the range of neonatal HSV-2 coding diversity.

The Amazon viral scaffolds and viral genomes most important for river and plume segregation. The Amazon viral scaffolds and viral genomes most important.

Comparison of levels of microbiome diversity by BMI, stratified by geography. Comparison of levels of microbiome diversity by BMI, stratified by geography.

ToxT production profiles of single-SNP strains and double-, triple-, and quadruple-SNP combination strains. ToxT production profiles of single-SNP strains.

OTU and family-level changes in murine gut as a result of acarbose feeding on a high-starch diet. OTU and family-level changes in murine gut as a result.

Phylogenetic analysis of K. quasipneumoniae subsp

Bacterial composition of olive fermentations is affected by microbial inoculation. Bacterial composition of olive fermentations is affected by microbial.

Functional microbiome differences between high-fat and standard chow diets. Functional microbiome differences between high-fat and standard chow diets.

ITS rRNA gene locus. ITS rRNA gene locus. Schematic of the eukaryotic ribosomal gene cluster. The SILVA database contains sequences of the 18S gene, while.

KEGG cluster of DEGs of S

Dominant bacterial phyla found in different stages.

OMV-enriched proteins show a conserved N-terminal LES motif.

TcpA production profiles of single-SNP strains and double-, triple-, and quadruple-SNP combination strains. TcpA production profiles of single-SNP strains.

CT production profiles of single-SNP strains and double-, triple-, and quadruple-SNP combination strains. CT production profiles of single-SNP strains.

Comparison of community fungal and bacterial/archaeal diversity levels

Identification of PVM candidates by quantitative mass spectrometry.

Comparison between early-life and year 2 AMR levels.

Normalized abundance of tetracycline resistance genes in Swedish infants by AMR++. Normalized abundance of tetracycline resistance genes in Swedish infants.

Shannon rarefaction analysis.

Unsupervised principal-component analysis (PCA) of 129 seroreactive antigens for adults and children from different geographical locations. Unsupervised.

Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.

Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock communities. Relative abundance of taxa in the 16S rRNA PCR amplicon and gDNA mock.

Acarbose reversibly changes the structure of the murine gut community.

Distinct antibiotic pretreatments have differential impacts on C

Northern shovelers may have unique microbiome differences with respect to IAV infection, relative to the other duck species. Northern shovelers may have.

Batch variation of formulations from two products by two different genomic-scale techniques. Batch variation of formulations from two products by two different.

Relative abundances of bacterial/archaeal groups in 16S rRNA data set.

Primary GBM cells support productive HCMV replication in vitro.

Presentation transcript:

Positions of LSUCC isolates relative to matching OTUs within the top 60 ranks for the most successful experiment, CJ2, which is enlarged to allow for OTU taxonomy labels. Positions of LSUCC isolates relative to matching OTUs within the top 60 ranks for the most successful experiment, CJ2, which is enlarged to allow for OTU taxonomy labels. OTUs are ordered by decreasing relative abundance, according to the average of duplicate samples. LSUCC isolates with best blast hits to the representative sequence for a given OTU are in bold. Stars indicate OTUs with cultured representatives from other LSUCC experiments. Isolates with matching OTUs with ranks lower than 60 are detailed in Table S1 in the supplemental material. Michael W. Henson et al. mSphere 2016; doi:10.1128/mSphere.00028-16