Supplementary Figure 4. Comparisons of MethyLight and gene expression data. PMR values (X-axis) were plotted against log2 gene expression values (Y-axis)

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Supplementary Figure 4. Comparisons of MethyLight and gene expression data. PMR values (X-axis) were plotted against log2 gene expression values (Y-axis) obtained from analyses on Affymetrix Human Genome U133 Plus 2.0 Arrays. The equation for a linear fit of the data and correlation coefficient are provided along with the location of the MethyLight reaction relative to the proximal NCBI-designated Reference Sequence (RefSeq) transcript.

HB-266 is 287-bp upstream of start REFSEQ NM_000484

HB-266 is 287-bp upstream of start REFSEQ NM_000484

HB-266 is 287-bp upstream of start REFSEQ NM_000484

HB-249 is 9-bp upstream of start REFSEQ NM_000044

HB-258 is in exon 99-bp downstream of start REFSEQ NM_001709

HB-258 is in exon 99-bp downstream of start REFSEQ NM_001709

HB-363 is 32-bp upstream of start REFSEQ NM_004052

HB-363 is 32-bp upstream of start REFSEQ NM_004052

HB-166 is 93-bp upstream of start REFSEQ NM_001033953

HB-166 is 93-bp upstream of start REFSEQ NM_001033953

HB-146 is 168-bp upstream of start REFSEQ NM_053056

HB-146 is 168-bp upstream of start REFSEQ NM_053056

HB-075 is in exon 132-bp downstream of start REFSEQ NM_001257

HB-075 is in exon 132-bp downstream of start REFSEQ NM_001257

HB-328 is in exon 168-bp downstream of start REFSEQ NM_000076

HB-328 is in exon 168-bp downstream of start REFSEQ NM_000076

HB-329 is in exon 986-bp downstream of start REFSEQ NM_000076

HB-329 is in exon 986-bp downstream of start REFSEQ NM_000076

HB-081 is in exon 306-bp downstream of start REFSEQ NM_058197

HB-081 is in exon 306-bp downstream of start REFSEQ NM_058197

HB-173 is in exon 332-bp downstream of start REFSEQ NM_004936

HB-195 is in exon 4-bp downstream of start REFSEQ NM_001804

HB-480 is 247-bp upstream of start REFSEQ NM_001806

HB-480 is 247-bp upstream of start REFSEQ NM_001806

HB-310 is in exon 57-bp downstream of start REFSEQ NM_001307

HB-193 is in exon 342-bp downstream of start REFSEQ NM_000089

HB-197 is in exon 37-bp downstream of start REFSEQ NM_004378

HB-054 is 97-bp upstream of start REFSEQ NM_001338

HB-054 is 97-bp upstream of start REFSEQ NM_001338

HB-054 is 97-bp upstream of start REFSEQ NM_001338

HB-223 is in intron 512-bp downstream of start REFSEQ NM_000785

HB-218 is in exon 266-bp downstream of start REFSEQ NM_006094

HB-218 is in exon 266-bp downstream of start REFSEQ NM_006094

HB-048 is in exon 385-bp downstream of start REFSEQ NM_013238

HB-048 is in exon 385-bp downstream of start REFSEQ NM_013238

HB-252 is 463-bp upstream of start REFSEQ NM_000794

HB-164 is in exon 143-bp downstream of start REFSEQ NM_000125

HB-164 is in exon 143-bp downstream of start REFSEQ NM_000125

HB-164 is in exon 143-bp downstream of start REFSEQ NM_000125

HB-164 is in exon 143-bp downstream of start REFSEQ NM_000125

HB-442 is 21-bp upstream of start REFSEQ NM_001039706

HB-254 is 423-bp upstream of start REFSEQ NM_000807

HB-255 is 847-bp upstream of start REFSEQ NM_000817

HB-255 is 847-bp upstream of start REFSEQ NM_000817

HB-327 is 371-bp upstream of start REFSEQ NM_001002295

HB-323 is in intron 394-bp downstream of start REFSEQ NM_002052

HB-323 is in intron 394-bp downstream of start REFSEQ NM_002052

HB-323 is in intron 394-bp downstream of start REFSEQ NM_002052

HB-324 is in exon 3625-bp downstream of start REFSEQ NM_002052

HB-324 is in exon 3625-bp downstream of start REFSEQ NM_002052

HB-324 is in exon 3625-bp downstream of start REFSEQ NM_002052

HB-357 is 93-bp upstream of start REFSEQ NM_004864

HB-222 is in exon 4932-bp downstream of start REFSEQ NM_000514

HB-426 is 9-bp upstream of start REFSEQ NM_018960

HB-250 is 863-bp upstream of start REFSEQ NM_000834

HB-250 is 863-bp upstream of start REFSEQ NM_000834

HB-168 is in intron 1648-bp downstream of start REFSEQ NM_006497

HB-168 is in intron 1648-bp downstream of start REFSEQ NM_006497

HB-440 is in exon 536-bp downstream of start REFSEQ NM_006897

HB-069 is in exon 37-bp downstream of start REFSEQ NM_014333

HB-069 is in exon 37-bp downstream of start REFSEQ NM_014333

HB-069 is in exon 37-bp downstream of start REFSEQ NM_014333

HB-069 is in exon 37-bp downstream of start REFSEQ NM_014333

HB-069 is in exon 37-bp downstream of start REFSEQ NM_014333

HB-069 is in exon 37-bp downstream of start REFSEQ NM_014333

HB-175 is 10-bp upstream of start REFSEQ NM_004795

HB-481 is in intron 2041-bp downstream of start REFSEQ NM_020805

HB-219 is 219-bp upstream of start REFSEQ NM_000527

HB-219 is 219-bp upstream of start REFSEQ NM_000527

HB-219 is 219-bp upstream of start REFSEQ NM_000527

HB-070 is in exon 2461-bp downstream of start REFSEQ NM_019839

HB-159 is in intron 327-bp downstream of start REFSEQ NM_002412

HB-160 is in exon 48-bp downstream of start REFSEQ NM_002412

HB-204 is 82-bp upstream of start REFSEQ NM_005950

HB-207 is in exon 177-bp downstream of start REFSEQ NM_005954

HB-058 is in exon 3093-bp downstream of start REFSEQ NM_005957

HB-058 is in exon 3093-bp downstream of start REFSEQ NM_005957

HB-058 is in exon 3093-bp downstream of start REFSEQ NM_005957

HB-058 is in exon 3093-bp downstream of start REFSEQ NM_005957

HB-259 is in exon 35-bp downstream of start REFSEQ NM_002500

HB-260 is in exon 58-bp downstream of start REFSEQ NM_006160

HB-320 is 40-bp upstream of start REFSEQ NM_033120

HB-485 is in exon 159-bp downstream of start REFSEQ NM_014697

HB-485 is in exon 159-bp downstream of start REFSEQ NM_014697

HB-242 is 447-bp upstream of start REFSEQ NM_004852 *HB-242average HB-242 is 447-bp upstream of start REFSEQ NM_004852

HB-242 is 447-bp upstream of start REFSEQ NM_004852

HB-242 is 447-bp upstream of start REFSEQ NM_004852

HB-243 is in intron 2387-bp downstream of start REFSEQ NM_004852 *HB-243average HB-243 is in intron 2387-bp downstream of start REFSEQ NM_004852

HB-243 is in intron 2387-bp downstream of start REFSEQ NM_004852

HB-243 is in intron 2387-bp downstream of start REFSEQ NM_004852

HB-446 is in intron 2387-bp downstream of start REFSEQ NM_004852

HB-483 is in intron 26138-bp downstream of start REFSEQ NM_198040

HB-483 is in intron 26138-bp downstream of start REFSEQ NM_198040

HB-482 is 523-bp upstream of start REFSEQ NM_178013

HB-149 is in exon 2939-bp downstream of start REFSEQ NM_000926

HB-149 is in exon 2939-bp downstream of start REFSEQ NM_000926

HB-169 is in exon 903-bp downstream of start REFSEQ NM_000926

HB-169 is in exon 903-bp downstream of start REFSEQ NM_000926

HB-060 is 8-bp upstream of start REFSEQ NM_138712

HB-176 is in exon 77-bp downstream of start REFSEQ NM_000965

HB-176 is in exon 77-bp downstream of start REFSEQ NM_000965

HB-176 is in exon 77-bp downstream of start REFSEQ NM_000965

HB-176 is in exon 77-bp downstream of start REFSEQ NM_000965

HB-322 is in exon 300-bp downstream of start REFSEQ NM_206963

HB-322 is in exon 300-bp downstream of start REFSEQ NM_206963

HB-044 is in exon 216-bp downstream of start REFSEQ NM_007182

HB-185 is in exon 43-bp downstream of start REFSEQ NM_002899

HB-185 is in exon 43-bp downstream of start REFSEQ NM_002899

HB-085 is in exon 274-bp downstream of start REFSEQ NM_015278

HB-085 is in exon 274-bp downstream of start REFSEQ NM_015278

HB-085 is in exon 274-bp downstream of start REFSEQ NM_015278

HB-085 is in exon 274-bp downstream of start REFSEQ NM_015278

HB-085 is in exon 274-bp downstream of start REFSEQ NM_015278

HB-387 is 269-bp upstream of start REFSEQ NM_002970

HB-387 is 269-bp upstream of start REFSEQ NM_002970

HB-194 is in intron 137-bp downstream of start REFSEQ NM_052863

HB-184 is 299-bp upstream of start REFSEQ NM_021115

HB-184 is 299-bp upstream of start REFSEQ NM_021115

HB-315 is 40415-bp upstream of start REFSEQ NM_005905

HB-064 is in exon 66-bp downstream of start REFSEQ NM_001018003

HB-215 is 12659-bp downstream of end REFSEQ NM_001032280

HB-215 is 12659-bp downstream of end REFSEQ NM_001032280

HB-215 is 12659-bp downstream of end REFSEQ NM_001032280

HB-145 is 261-bp upstream of start REFSEQ NM_003225

HB-244 is in intron 3364-bp downstream of start REFSEQ NM_003225

HB-361 is in exon 68-bp downstream of start REFSEQ NM_006528

HB-247 is 636-bp upstream of start REFSEQ NM_003246

HB-247 is 636-bp upstream of start REFSEQ NM_003246

HB-247 is 636-bp upstream of start REFSEQ NM_003246

HB-443 is in intron 368-bp downstream of start REFSEQ NM_006034

HB-443 is in intron 368-bp downstream of start REFSEQ NM_006034

HB-047 is in exon 744-bp downstream of start REFSEQ NM_000474

HB-364 is in intron 86851-bp downstream of start REFSEQ NM_199427

HB-431 is 72-bp upstream of start REFSEQ NM_198480