Jens Klump | OCE Science Leader Earth Science Informatics

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Presentation transcript:

Implementing Sample Identification in Australia – The IGSN Pilot Project Jens Klump | OCE Science Leader Earth Science Informatics Anusuriya Devaraju, Pavel Golodoniuc, Simon Cox, Lesley Wyborn, Irina Bastrakova 13 September 2016 Mineral REsources

What is the IGSN? “M-1” is obviously not a unique name. IGSN in Australia | Jens Klump et al.

Try it out: http://doi.org/10273/AU288 IGSN Overview What IGSN does: Registry of identifiers that are guaranteed to be unique and persistent. Uniqueness is achieved through a hierarchical governance system. (like assigning PI addresses) Facilitate internet-based discovery and access to physical samples Web application and programmatic access to sample metadata catalogues Network with sample repositories and data centres Ensure preservation and access of sample descriptions and metadata Aid identification of samples in the literature and link to catalogues and databases. Try it out: http://doi.org/10273/AU288 IGSN in Australia | Jens Klump et al.

What IGSN can be used for Geological samples and other materials (rocks, water, biological materials, …) Collections (groupings of samples) Sampling features (boreholes, outcrops, …) Samples can be linked to each other through the “related identifier” metadata element. IGSN in Australia | Jens Klump et al.

IGSN in Australia IGSN currently has three members in Australia: CSIRO Geoscience Australia Curtin University Joint governance of the use of IGSN in Australia. Community building (e.g. workshops) to introduce sample identifiers to other institutions and other science disciplines. IGSN in Australia | Jens Klump et al.

IGSN @ CSIRO CSIRO became a member of IGSN in 2013. IGSN are currently used for: Collection of the Australian Resources Research Centre Mineral Reflectance Spectra Reference Collection Capricorn Distal Footprints minerals exploration project Future use cases: Soils collection Insect collection IGSN in Australia | Jens Klump et al.

IGSN @ Geoscience Australia GA became a member of IGSN in 2014. IGSN are currently used in the GA collection. 1.6 Million samples registered. GA is the IGSN Registration Agent for the geological surveys of the Australian states and territories. IGSN in Australia | Jens Klump et al.

IGSN @ Curtin Curtin University became a member of IGSN in 2015. IGSN is currently used in the John de Laeter Centre for Geochemistry. IGSN and data management are supported by the Curtin University Library. JdLC, CSIRO, Univ. Western Australia and Geol. Survey of Western Australia work together in the Natural Resources Research Precinct. IGSN in Australia | Jens Klump et al.

Australian IGSN Portal A grant from the NCRIS Research Data Services programme made it possible to develop a demonstrator for a common Australia Geo Sample Portal. Metadata are harvested into a common metadata portal to facilitate the discovery of samples curated by Australian IGSN members. Samples are described in a common metadata schema based on the international IGSN description schema. IGSN in Australia | Jens Klump et al.

Tracking the sample life cycle IGSN is used in CSIRO for tracking samples and to support sample logistics. In the field: unambiguous identification, metadata capture with mobile app. In the lab: identification and tying data to samples. Storage: identify collections and samples in storage, catalogue, manage sample logistics. IGSN in Australia | Jens Klump et al.

Linking Samples with Data and Publications Specimen (IGSN) Spectrum (DOI) Publication (DOI) cross-reference cross-reference IGSN in Australia | Jens Klump et al.

Conclusions IGSN was introduced in Australia through a collaboration of national labs (CSIRO), government agencies (GA) and academia (Curtin Uni). CSIRO, GA and Curtin Uni work together to build a community of IGSN users, develop common sample descriptions and online catalogues. The use of IGSN is to be expanded to novel use cases. General info: http://www.igsn.org Technical info: http://igsn.github.io Demo portal: http://igsn2.csiro.au IGSN in Australia | Jens Klump et al.

Jens Klump Science Leader Earth Science Informatics Mineral Resources Land & Water Jens Klump Science Leader Earth Science Informatics Simon Cox Research Scientist e simon.cox@csiro.au t +61 8 6436 8828 Australian National University/NCI e jens.klump@csiro.au w www.csiro.au/en/Research/MRF Lesley Wyborn Adjunct Fellow e lesley.wyborn@anu.edu.au Anusuriya Devaraju Postdoctoral Fellow Geoscience Australia e anusuriya.devaraju@csiro.au Irina Bastrakova Senior Data Strategist e irina.bastrakova@ga.gov.au Pavel Golodoniuc Research Projects Officer e pavel.golodoniuc@csiro.au Mineral Resources