Python is Awesome! (and cooler than R)

My Research

What I Do Generate DNA Sequences Align Sequences to Reference Find Deletions Plot On Secondary Structure Measure 3D Distances Plot On Tertiary Structure

Generate DNA Sequences 320 Lines

Align Sequences to Reference Bowtie

Find Deletions 370 Lines

Three Dimensional Distances 150 Lines

Plot On Secondary Structure 650 Lines

Plot On 3D Structure 50 Lines

Text Manipulation

Bad PDB File

Rows and Columns

The Code Separates by Rows Separates by Columns Execution: python editPDBFormat.py myPDBFile.pdb

Good PDB File

FASTA Files

FASTQ Files

Alignment Files

BLAST Output

Moral Formatted = Code-able – NCBI – ENSEMBL – PDB Automate! – Don’t do anything more than 3 times