WSSP Chapter 10 Literature Search Where do you learn about the function of your gene? atttaccgtg ttggattgaa attatcttgc atgagccagc tgatgagtat gatacagttt.

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Presentation transcript:

WSSP Chapter 10 Literature Search Where do you learn about the function of your gene? atttaccgtg ttggattgaa attatcttgc atgagccagc tgatgagtat gatacagttt tccgtattaa taacgaacgg ccggaaatag gatcccgatc atgattgctt caatattttc acttcaatga ttggttctaa gcattcgaat gcgtacccgt ttgattaata tttccatttc tgtcccagtt tttaattttc atttcttttg gttaaaaaat tcccagtctc ttgaatgctt ttctaaaatc tttaattcaa ttatttatta gaatcttctg ttttgagaac tttgtaatgt aattaaataa tttgatgaaa tgattatgaa tgcgaataaa ttattaattt accgtgctga ttggattgaa attatcttgc atgagccagc tgatgagtat gatacagttt tccgtattaa taacgaacgg ccggaaatag gatcccgatc atgattgctt caatattttc acttcaatga ttggttctaa gcattcgaat gcgtacccgt ttgattaata tttccatttc tgtcccagtt tttaattttc atttcttttg gttaaaaaat tcccagtctc ttgaatgctt ttctaaaatc tttaattcaa ttatttatta gaatcttctg ttttgagaac tttgtaatgt aattaaataa tttgatgaaa tgattatgaa tgcgaataaa ttattaattt accgtgttgg attgaaggta attatcttgc atgagccagc tgatgagtat gatacagttt

© 2014 WSSP

DSAP Analysis Page: Coding © 2014 WSSP

Sequence Report p © 2014 WSSP One of the first places to look are the initial gene reports at NCBI, especially protein reports

p Google Search © 2014 WSSP

A bad Google match with LC6 p © 2014 WSSP

p Another Google match © 2014 WSSP

p Wikipedia - © 2014 WSSP

Wikipedia - (cont) © 2014 WSSP

p © 2014 WSSP

p List of matches to different textbooks © 2014 WSSP

p List of matches to references within a textbook © 2014 WSSP

p © 2014 WSSP

p List of matches in PubMed © 2014 WSSP

p Abstract of research article © 2014 WSSP

Original research article p © 2014 WSSP

p Needed information © 2014 WSSP

Enter Information into DSAP p © 2014 WSSP

Question 2 of the DSAP Analysis Page: Can sometimes find human matches by scrolling down near the bottom of the BLASTP searches All Plants © 2014 WSSP

Species NameCommon Name Zea mays corn Ricinus communiswheat Populus trichocarpapopular (tree) Vitis viniferagrape Glycine maxsoy bean Arabidopsis thalianamustard (model organism) Oryza sativa Japonicarice Saacharomyces cerevisiaeYeast (model organism) Strongylocentrotus purpuratusSea urchin Ixodes scapularisDeer tick Drosophila melanogasterFruit fly (model organism) Caenorhabditis elegansNematode (model organism) Bos taurusCow Rattus norvegicusRat Mus musculus Mouse (model organism) Homo sapiensHuman © 2014 WSSP

Best match on BLASTP search Identical Proteins Select to go to Related Sequences © 2014 WSSP

Change the filter related sequences page to humans © 2014 WSSP

Results of the search for human proteins © 2014 WSSP

Perform the BLASTP Search again © 2014 WSSP

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