1. Building Database Resources For Translational Research in Rosaceae Sook Jung, Taein Lee, Stephen Ficklin, Chun-Huai Cheng, Anna Blenda, Sushan Ru, Ping Zheng, Kate Evans, Cameron Peace, Nnadozie Oraguzie, Albert Abbott, Desmond Layne, Mercy Olmstead, Frederick Gmitter, Chunxian Chen, Lukas Mueller, Dorrie Main

2. Topics Introduction Software Data Demo of GDR Species Page Search Sites for Genomic/Genetic Data Breeding data and tools Current Focus

3. Generic Database schema Chado Content Management System Drupal modules as web front-end for Chado 3 Development of open source tools for an Efficient and Flexible Database Construction

4. Genetics Breeding Germplasm Diversity Genomics Integrated Data & Tools Basic Science Structure and evolution of genome, gene function, genetic variability, mechanism underlying traits Translational Science QTL /marker discovery, genetic mapping, Breeding values Applied Science Management of breeding data Utilization of DNA information in breeding decisions Integrated Data Facilitates Discovery

5. Species page

6. 6

8. Search for genes (from WGS or NCBI) and unigene 8

9. Gene Search Results 9

10. Search and Explore

11. Marker Detail Page

12. Search for syntenic regions using Gbrowse_Syn

13. Search For Trait Loci (QTL/MTL)

15. Breeding Data: Phenotypic Data 15

16. Genotypic data search 16

17. 17

18. Variety Detail Page

19. CrossAssist: Generates a list of parents and the number of seedlings to get the progeny with desired traits

20. Current Objectives 1.Continue to integrate new genetic data (marker, QTL, maps) and genomic data. 2.Facilitate community gene editing effort. 3.Develop online site where breeders can upload/edit their own data. 4.Develop breeders toolbox in Tripal. 5.Further develop tools to facilitate marker- assisted breeding.

21. Acknowledgements GDR team members: Sook Jung, Taein Lee, Stephen Ficklin, Chun-Huai Cheng, Ping Zheng, Anna Blenda and Sushan Ru Taein Lee Stephen Ficklin Chun-Huai Cheng Ping Zheng Anna Blenda Sushan Ru Sook Jung Project coPIs- Dorrie Main (PI), Bert Abbott, Cameron Peace, Kate Evans, Des Layne, Nnadozie Oraguzie, Mercy Olmstead, Fred Gmitter Jr., the RosBREED teams Rosaceae and Bioinformatics Community USDA NIFA SCRI, NSF Plant Genome Program, MARS, USDA- ARS, Washington Tree Fruit Research Commission, WSU, Clemson University, University of Florida, Boyce Thompson Institute