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http://cs273a.stanford.edu [Bejerano Aut07/08] 1 MW 11:00-12:15 in Redwood G19 Profs: Serafim Batzoglou, Gill Bejerano TA: Cory McLean
![[Bejerano Aut07/08] 1 MW 11:00-12:15 in Redwood G19 Profs: Serafim Batzoglou, Gill Bejerano TA: Cory McLean](http://images.slideplayer.com/17/5355427/slides/slide_1.jpg "[Bejerano Aut07/08] 1 MW 11:00-12:15 in Redwood G19 Profs: Serafim Batzoglou, Gill Bejerano TA: Cory McLean")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 2 Lecture 15 Transcription
![[Bejerano Aut07/08] 2 Lecture 15 Transcription](http://images.slideplayer.com/17/5355427/slides/slide_2.jpg "[Bejerano Aut07/08] 2 Lecture 15 Transcription")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 3
![[Bejerano Aut07/08] 3](http://images.slideplayer.com/17/5355427/slides/slide_3.jpg "[Bejerano Aut07/08] 3")
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4 mRNA
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http://cs273a.stanford.edu [Bejerano Aut07/08] 5 EST
![[Bejerano Aut07/08] 5 EST](http://images.slideplayer.com/17/5355427/slides/slide_5.jpg "[Bejerano Aut07/08] 5 EST")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 6 Microarrays
![[Bejerano Aut07/08] 6 Microarrays](http://images.slideplayer.com/17/5355427/slides/slide_6.jpg "[Bejerano Aut07/08] 6 Microarrays")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 7 Transcript Ends
![[Bejerano Aut07/08] 7 Transcript Ends](http://images.slideplayer.com/17/5355427/slides/slide_7.jpg "[Bejerano Aut07/08] 7 Transcript Ends")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 8 Transcript mapping Affy arrays CAGE, SAGE, diTAGS, etc.
![[Bejerano Aut07/08] 8 Transcript mapping Affy arrays CAGE, SAGE, diTAGS, etc.](http://images.slideplayer.com/17/5355427/slides/slide_8.jpg "[Bejerano Aut07/08] 8 Transcript mapping Affy arrays CAGE, SAGE, diTAGS, etc.")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 9 End Picture
![[Bejerano Aut07/08] 9 End Picture](http://images.slideplayer.com/17/5355427/slides/slide_9.jpg "[Bejerano Aut07/08] 9 End Picture")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 10 Transcripts, transcripts everywhere Human Genome Transcribed (Tx) Tx from both strands Leaky tx? Functional?
![[Bejerano Aut07/08] 10 Transcripts, transcripts everywhere Human Genome Transcribed (Tx) Tx from both strands Leaky tx.](http://images.slideplayer.com/17/5355427/slides/slide_10.jpg "Functional .")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 11
![[Bejerano Aut07/08] 11](http://images.slideplayer.com/17/5355427/slides/slide_11.jpg "[Bejerano Aut07/08] 11")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 12
![[Bejerano Aut07/08] 12](http://images.slideplayer.com/17/5355427/slides/slide_12.jpg "[Bejerano Aut07/08] 12")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 13
![[Bejerano Aut07/08] 13](http://images.slideplayer.com/17/5355427/slides/slide_13.jpg "[Bejerano Aut07/08] 13")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 14
![[Bejerano Aut07/08] 14](http://images.slideplayer.com/17/5355427/slides/slide_14.jpg "[Bejerano Aut07/08] 14")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 15 Structural RNAs
![[Bejerano Aut07/08] 15 Structural RNAs](http://images.slideplayer.com/17/5355427/slides/slide_15.jpg "[Bejerano Aut07/08] 15 Structural RNAs")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 16
![[Bejerano Aut07/08] 16](http://images.slideplayer.com/17/5355427/slides/slide_16.jpg "[Bejerano Aut07/08] 16")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 17
![[Bejerano Aut07/08] 17](http://images.slideplayer.com/17/5355427/slides/slide_17.jpg "[Bejerano Aut07/08] 17")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 18
![[Bejerano Aut07/08] 18](http://images.slideplayer.com/17/5355427/slides/slide_18.jpg "[Bejerano Aut07/08] 18")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 19
![[Bejerano Aut07/08] 19](http://images.slideplayer.com/17/5355427/slides/slide_19.jpg "[Bejerano Aut07/08] 19")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 20
![[Bejerano Aut07/08] 20](http://images.slideplayer.com/17/5355427/slides/slide_20.jpg "[Bejerano Aut07/08] 20")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 21
![[Bejerano Aut07/08] 21](http://images.slideplayer.com/17/5355427/slides/slide_21.jpg "[Bejerano Aut07/08] 21")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 22 MicroRNA
![[Bejerano Aut07/08] 22 MicroRNA](http://images.slideplayer.com/17/5355427/slides/slide_22.jpg "[Bejerano Aut07/08] 22 MicroRNA")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 23
![[Bejerano Aut07/08] 23](http://images.slideplayer.com/17/5355427/slides/slide_23.jpg "[Bejerano Aut07/08] 23")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 24 Human Specific Rapid Evolution hm r hm r c 100%id maximally changed
![[Bejerano Aut07/08] 24 Human Specific Rapid Evolution hm r hm r c 100%id maximally changed](http://images.slideplayer.com/17/5355427/slides/slide_24.jpg "[Bejerano Aut07/08] 24 Human Specific Rapid Evolution hm r hm r c 100%id maximally changed")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 25 Human accelerated
![[Bejerano Aut07/08] 25 Human accelerated](http://images.slideplayer.com/17/5355427/slides/slide_25.jpg "[Bejerano Aut07/08] 25 Human accelerated")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 26 Nearest Neighbor Model for RNA Secondary Structure Free Energy at 37 O C: Mathews, Disney, Childs, Schroeder, Zuker, & Turner. 2004. PNAS 101: 7287.
![[Bejerano Aut07/08] 26 Nearest Neighbor Model for RNA Secondary Structure Free Energy at 37 O C: Mathews, Disney, Childs, Schroeder, Zuker, & Turner.](http://images.slideplayer.com/17/5355427/slides/slide_26.jpg "PNAS 101:")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 27
![[Bejerano Aut07/08] 27](http://images.slideplayer.com/17/5355427/slides/slide_27.jpg "[Bejerano Aut07/08] 27")
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http://cs273a.stanford.edu [Bejerano Aut07/08] 28
![[Bejerano Aut07/08] 28](http://images.slideplayer.com/17/5355427/slides/slide_28.jpg "[Bejerano Aut07/08] 28")
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