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http://cs273a.stanford.edu [Bejerano Spr06/07] 1 TTh 11:00-12:15 in Clark S361 Profs: Serafim Batzoglou, Gill Bejerano TAs: George Asimenos, Cory McLean
![[Bejerano Spr06/07] 1 TTh 11:00-12:15 in Clark S361 Profs: Serafim Batzoglou, Gill Bejerano TAs: George Asimenos, Cory McLean](http://images.slideplayer.com/17/5341127/slides/slide_1.jpg "[Bejerano Spr06/07] 1 TTh 11:00-12:15 in Clark S361 Profs: Serafim Batzoglou, Gill Bejerano TAs: George Asimenos, Cory McLean")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 2 Lecture 13 Insulators in the Human Genome Discuss Project Co-option
![[Bejerano Spr06/07] 2 Lecture 13 Insulators in the Human Genome Discuss Project Co-option](http://images.slideplayer.com/17/5341127/slides/slide_2.jpg "[Bejerano Spr06/07] 2 Lecture 13 Insulators in the Human Genome Discuss Project Co-option")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 3 Insulators: A Reminder
![[Bejerano Spr06/07] 3 Insulators: A Reminder](http://images.slideplayer.com/17/5341127/slides/slide_3.jpg "[Bejerano Spr06/07] 3 Insulators: A Reminder")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 4 CTCF [Ohlsson et al., 2001]
![[Bejerano Spr06/07] 4 CTCF [Ohlsson et al., 2001]](http://images.slideplayer.com/17/5341127/slides/slide_4.jpg "[Bejerano Spr06/07] 4 CTCF [Ohlsson et al., 2001]")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 5 The Glass Ceiling [Ohlsson et al., 2001]
![[Bejerano Spr06/07] 5 The Glass Ceiling [Ohlsson et al., 2001]](http://images.slideplayer.com/17/5341127/slides/slide_5.jpg "[Bejerano Spr06/07] 5 The Glass Ceiling [Ohlsson et al., 2001]")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 6 ChIP-chip reminder
![[Bejerano Spr06/07] 6 ChIP-chip reminder](http://images.slideplayer.com/17/5341127/slides/slide_6.jpg "[Bejerano Spr06/07] 6 ChIP-chip reminder")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 7 Breaking the Glass Ceiling [Kim et al., 2007]
![[Bejerano Spr06/07] 7 Breaking the Glass Ceiling [Kim et al., 2007]](http://images.slideplayer.com/17/5341127/slides/slide_7.jpg "[Bejerano Spr06/07] 7 Breaking the Glass Ceiling [Kim et al., 2007]")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 8 A known locus
![[Bejerano Spr06/07] 8 A known locus](http://images.slideplayer.com/17/5341127/slides/slide_8.jpg "[Bejerano Spr06/07] 8 A known locus")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 9 More & less interesting correlations
![[Bejerano Spr06/07] 9 More & less interesting correlations](http://images.slideplayer.com/17/5341127/slides/slide_9.jpg "[Bejerano Spr06/07] 9 More & less interesting correlations")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 10 Outliers
![[Bejerano Spr06/07] 10 Outliers](http://images.slideplayer.com/17/5341127/slides/slide_10.jpg "[Bejerano Spr06/07] 10 Outliers")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 11 Consensus!
![[Bejerano Spr06/07] 11 Consensus!](http://images.slideplayer.com/17/5341127/slides/slide_11.jpg "[Bejerano Spr06/07] 11 Consensus!")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 12 Not all are captured
![[Bejerano Spr06/07] 12 Not all are captured](http://images.slideplayer.com/17/5341127/slides/slide_12.jpg "[Bejerano Spr06/07] 12 Not all are captured")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 13 From in vitro to in silico [Xie et al., 2007]
![[Bejerano Spr06/07] 13 From in vitro to in silico [Xie et al., 2007]](http://images.slideplayer.com/17/5341127/slides/slide_13.jpg "[Bejerano Spr06/07] 13 From in vitro to in silico [Xie et al., 2007]")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 14
![[Bejerano Spr06/07] 14](http://images.slideplayer.com/17/5341127/slides/slide_14.jpg "[Bejerano Spr06/07] 14")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 15
![[Bejerano Spr06/07] 15](http://images.slideplayer.com/17/5341127/slides/slide_15.jpg "[Bejerano Spr06/07] 15")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 16
![[Bejerano Spr06/07] 16](http://images.slideplayer.com/17/5341127/slides/slide_16.jpg "[Bejerano Spr06/07] 16")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 17
![[Bejerano Spr06/07] 17](http://images.slideplayer.com/17/5341127/slides/slide_17.jpg "[Bejerano Spr06/07] 17")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 18 Genomic Distribution of Ultraconserved Elements exonic non possibly
![[Bejerano Spr06/07] 18 Genomic Distribution of Ultraconserved Elements exonic non possibly](http://images.slideplayer.com/17/5341127/slides/slide_18.jpg "[Bejerano Spr06/07] 18 Genomic Distribution of Ultraconserved Elements exonic non possibly")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 19 Uniquely Abundant in Coelacanth ? x Upto 80%id between Coelacanth instances and some human instances, inc uc.338. 100 diverged copies in a Gigabase 60 highly similar copies in a Megabase
![[Bejerano Spr06/07] 19 Uniquely Abundant in Coelacanth .](http://images.slideplayer.com/17/5341127/slides/slide_19.jpg "x Upto 80%id between Coelacanth instances and some human instances, inc uc diverged copies in a Gigabase 60 highly similar copies in a Megabase.")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 20 Repeats / obile Elements ("selfish DNA") Human Genome: 3*10 9 letters 1.5% known function >50% junk
![[Bejerano Spr06/07] 20 Repeats / obile Elements ( selfish DNA ) Human Genome: 3*10 9 letters 1.5% known function >50% junk](http://images.slideplayer.com/17/5341127/slides/slide_20.jpg "[Bejerano Spr06/07] 20 Repeats / obile Elements ( selfish DNA ) Human Genome: 3*10 9 letters 1.5% known function >50% junk")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 21 The LF SINE (for Lobefin Fish / “Living Fossil”) Reconstruction out back target site duplications not similar to any known repeat
![[Bejerano Spr06/07] 21 The LF SINE (for Lobefin Fish / Living Fossil ) Reconstruction out back target site duplications not similar to any known repeat](http://images.slideplayer.com/17/5341127/slides/slide_21.jpg "[Bejerano Spr06/07] 21 The LF SINE (for Lobefin Fish / Living Fossil ) Reconstruction out back target site duplications not similar to any known repeat")
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http://cs273a.stanford.edu [Bejerano Spr06/07] 22 To Be Continued….
![[Bejerano Spr06/07] 22 To Be Continued….](http://images.slideplayer.com/17/5341127/slides/slide_22.jpg "[Bejerano Spr06/07] 22 To Be Continued….")
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