1. Energy Production 3 Biochemical Mechanisms Utilized Aerobic Respiration Anaerobic Respiration Fermentation

2. Aerobic and anaerobic respiration Aerobic respiration – terminal electron acceptor is oxygen Anaerobic respiration – terminal electron acceptor is an inorganic molecule other than oxygen (e.g. nitrogen)

3. Aerobic Respiration  Molecular Oxygen (O 2 ) serves as the final e - acceptor of the ETC  O 2 is reduced to H 2 O  Energy-generating mode used by aerobic chemoheterotrophs  General term applied to most human pathogens  Energy source = Oxidation of organic compounds  Carbon Source = Organic Carbon  3 Coupled Pathways Utilized  Glycolysis  Kreb’s Cycle or Tricarboxylic Acid Cycle or Citric Acid Cycle  Respiratory Chain or Electron Transport Chain (ETC)

4. 1. Glycolysis (splitting of sugar) Carbohydrate (CHO) Catabolism Oxidation of Glucose into 2 molecules of Pyruvic acid CHO’s are highly reduced structures (thus, H-donors); excellent fuels Degradation of CHO thru series of oxidative reactions End Products of Glycolysis: 2 Pyruvic acid 2 NADH2 2 ATP

5. Glycolysis

6. 2. Krebs Cycle (Citric Acid Cycle,TCA) Series of chemical reactions that begin and end with citric acid 1. Initial substrate – modified end product of Glycolysis 2 Pyruvic Acid is modified to 2Acetyl-CoA, which enters the TCA cycle 2. Circuit of organic acids – series of oxidations and reductions Eukaryotes – Mitochondrial Matrix Prokaryotes – Cytoplasm of bacteria & Cell Membrane Products: 2 ATP 6 NADH2 2 FADH2 4 CO2

7. TCA cycle

8. 3. Electron Transport System Occurs within the cell membrane of Bacteria Chemiosomotic Model of Mitchell 34 ATP

9. Electron transport system

10. Overview of aerobic respiration

11. Anaerobic respiration Utilizes same 3 coupled pathways as Aerobic Respiration Used as an alternative to aerobic respiration Final electron acceptor something other than oxygen: NO 3 - : Pseudomonas, Bacillus. SO 4 - : Desulfovibrio CO 3 - : methanogens In Facultative organisms In Obligate anaerobes Lower production of ATP because only part of the TCA cycle and the electron transport chain operate.

12. Fermentation Incomplete oxidation of glucose or other carbohydrates in the absence of oxygen Uses organic compounds as terminal electron acceptors Effect - a small amount of ATP Production of ethyl alcohol by yeasts acting on glucose Formation of acid, gas & other products by the action of various bacteria on pyruvic acid

13. Fermentation

14. Fermentation may result in numerous end products 1. Type of organism 2. Original substrate 3. Enzymes that are present and active

15. Fermentation End Products

16. Metabolic strategies Pathways involved Final e- acceptor ATP yield Aerobic respiration Glycolysis, TCA, ET O2O2 38 Anaerobic respiration Glycolysis, TCA, ET NO 3 -, So 4 -2, CO 3 -3 variable Fermentatio n GlycolysisOrganic molecules 2

17. Many pathways of metabolism are bi-directional or amphibolic Metabolites can serve as building blocks or sources of energy Pyruvic acid can be converted into amino acids through amination Amino acids can be converted into energy sources through deamination Glyceraldehyde-3-phosphate can be converted into precursors for amino acids, carbohydrates and fats

18. Formation of ATP 1. substrate-level phosphorylation 2. oxidative phosphorylation, ( reduced chemicals) 3. Photophosphorylation (reduced chlorophyll molecules) Uses of ATP: Energy for active transport Energy for movement Energy for synthesis of cellular components ALL SYNTHESIS REACTIONS INVOLVE USE OF ENERGY

19. Substrate-level phosphorylation

20. Phosphorylation of glucose by ATP

21. Lipid Metabolism Lipids are essential to the structure and function of membranes Lipids also function as energy reserves, which can be mobilized as sources of carbon 90% of this lipid is “triacyglycerol” triacyglycerol lipase glycerol + 3 fatty acids The major fatty acid metabolism is “β-oxidation”

22. Lipid catabolism Lipids are broken down into their constituents of glycerol and fatty acids Glycerol is oxidised by glycolysis and the TCA cycle Lipids are broken down to 2 carbon acyl units where they enter the TCA cycle

23. Protein Catabolism

24. PROTEIN CATABOLISM Intact proteins cannot cross bacterial plasma membrane, so bacteria must produce extracellular enzymes called proteases and peptidases that break down the proteins into amino acids, which can enter the cell. Many of the amino acids are used in building bacterial proteins, but some may also be broken down for energy. If this is the way amino acids are used, they are broken down to some form that can enter the Kreb’s cycle. These reactions include: 1. Deamination—the amino group is removed, converted to an ammonium ion, and excreted. 2. Decarboxylation—the ---COOH group is removed 3. Dehydrogenation—a hydrogen is removed Tests for the presence of enzymes that allow various amino acids to be broken down are used in identifying bacteria in the lab.

25. Catobolism of organic food molecules Proteins and carbohydrates are degraded by secreted enzymes – proteases and amylases Amino acids must be deaminated for further oxidation

27. Microbial physiology. Microbial metabolism. Enzymes. Bioenergetics. Nutrition. Bacterial growth and multiplication.