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An In Silico Assay for Apoptosis in Yeast Lou Lieto John Eberth
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Introduction n The existence of apoptotic proteins in yeast would provide information on the origin of apoptosis in multicellular organisms n Homology between Human and C.elegans apoptotic proteins and yeast proteins was examined n Implications for yeast
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Apoptosis in yeast n Apoptosis in single celled organisms is counter-intuitive n One would expect that apoptosis in single celled organisms would rather quickly select it’s genome for extinction n However in single celled organisms that form colonies it is the survival of the colony rather than that of individual members that ensures the survival of the genome
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Apoptotic vs. Oncotic Death n Apoptosis n Karyorhexis –Budding- membrane shrinkage n Chromatin clumping –Regular cleavage of the DNA by a endonuclease n Lack of Inflamation n Oncosis n Karyolysis –Blebbing-increased membrane permeability n Random DNA breakage n Inflamation –Release of cellular contents
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Human and C.elegans Proteins n HUMAN n Caspases 1-9 n Bcl-2 n Bax n Bik n Bad n P53 n Cytochrome C n Tradd n Fadd n Flice n C.elegans n Ced 1-10
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Techniques n Human and C. elegans proteins were blasted against the S. Cerevisiae database in Genbank n The Hits were then entered into the Global Gene Hunter which checks 8 databases for the ORF in question n The results were studied for homology and any similar activity to the original search protein
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Results n Homology with yeast n Caspases 1-945% Av. n Ced 1-1052% Av. n Bcl-2 64% n Bax 42% n Bik42% n Bad 56% n P53 32% n Cytochrome C76% n Tradd47% n Fadd46% n Flice 44%
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Cytochrome C n Human Cytochrome C shared a 76% homology with Yeast Cytochrome C n This is to be expected considering that Cytochrome C plays an essential role in electron transport in the mitochondrial respiratory chain
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Global Gene Hunter n Except for Cytochrome C the gene hunter either failed to return any information regarding the ORFs in question or else it identified the yeast proteins as having a function dissimilar to that of the search protein
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What This Means n Human Caspase 1 and Ced 3 have closely related functions yet only share a 29 % identity n It is possible that some of the ORFs that are unidentified yet share a low homology with their search proteins have similar activity
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Future Areas of Study n Apoptosis in yeast needs to be identified via morphological or histological methods, such as the TUNEL assay n The Yeast genome needs better organization and full identification of protein functions
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