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CCE project update Metabolomics Raftery Group. Original Study 20 cancer, 28 normals and 14 with polyps NMR and GC-MS study.

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Presentation on theme: "CCE project update Metabolomics Raftery Group. Original Study 20 cancer, 28 normals and 14 with polyps NMR and GC-MS study."— Presentation transcript:

1 CCE project update Metabolomics Raftery Group

2 Original Study 20 cancer, 28 normals and 14 with polyps NMR and GC-MS study

3 CCE Samples and Experiments Healthy Control Colon Cancer Polyps Rectal Cancer unknown Sample number 461432414 Patient number 4610*32214 *9 sample were collected before/on the day of treatment/surgery  110 Samples received (104 patients)  1 H NMR experiment

4 26 metabolites quantified; 8 showed p<0.05 between cancer and normal Unsupervised analysis on all samples showed little difference Supervised analysis in progress. Shows some separation but needs additional MS data  more cancer samples needed for better discrimination model. Multivariate analysis

5 Seven metabolite model built on previous colon sample (17 Cancer, 17 Healthy), predict on CCE samples (14 Cancer, 46 Healthy, 32 Polyps)  Q1: For those samples collected on the day of treatment, which were drawn before therapy or surgery?  Q2: Are CCE samples collected as the same way as previous samples? Looks like colon cancer samples are failing, but many were collected after surgery. Could be showing some treatment effect.


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