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Sharing Standard Statistical Scripts: Simple Slides A Journey in Progress September 18 2012 Michael Carniello carmichael_oneill@yahoo.com Subgroup 3 of PhUSE Working Group 5
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The Question What platforms are available to use a medium for developing, publishing and maintaining Standard Statistical Scripts – with world-wide developers being in industry, academia and government? In FDA/PhUSE Meeting in early 2012, Subgroup 3 of Working Group 5 took on this question
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Well, It’s a Start Ian Fleming, Hanming Tu and Mike Carniello spent some time working as a sub-subgroup and looked hard at Github They also looked at GoogleDocs, as Github proved to be fairly intense Right now (September 18 2012), Mike’s opinion is that GoogleDocs provides a reasonable starting place for such a platform
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The Rest of This Slide Deck Some information about Github, how it looks and works, and why it was rejected Some information about GoogleDocs, how it looks and works, and why it seems like a reasonable first approach
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Github Used to develop Facebook, Twitter, etc. From Wikipedia
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Github: It’s Complicated
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Git/Bash shell for Windows
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Github in a Browser
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Github in a Browser (Deeper)
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Editing a Github file in a Browser
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Looks Good; What’s the Problem? In testers’ opinions, too much for classic statistical programming users – Too complicated an interface – Too much overhead for simple development – Too much training and education needed Fair enough; Github designed for classic programming languages like C and Java (not for things like R and SAS)
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GoogleDocs Designed for collaboration on a variety of documents Bar is low with respect to learning and using Advantage – not horriby sophisticated Disadvantage – not horribly sophisticated From Wikipedia:
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A Directory View in a Browser
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Editing a File in a Browser (with Revision History)
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More Editing in a Browser
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First Real Target: Efficacy by Site Figure R code (snip) from CTSpedia
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Efficacy by Site Figure SAS code (snip) on GoogleDocs
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Efficacy by Site: R Output
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Efficacy by Site: SAS Output
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The End ??? Not hardly! Mike’s suggested next steps: – 1. Pick a finite list of scripts to develop – 2. Assign primary authors and set milestones/deadlines for GoogleDoc deliveries – 3. After last development deadline, post to PhUSEWiki
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