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The New Internet and Biomedical Research Briefing to the Deans Advisory Board School of Medicine, UCSD San Diego, CA March 1, 2001 www.soe.uiuc.edu/~lsmarr.

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Presentation on theme: "The New Internet and Biomedical Research Briefing to the Deans Advisory Board School of Medicine, UCSD San Diego, CA March 1, 2001 www.soe.uiuc.edu/~lsmarr."— Presentation transcript:

1 The New Internet and Biomedical Research Briefing to the Deans Advisory Board School of Medicine, UCSD San Diego, CA March 1, 2001 www.soe.uiuc.edu/~lsmarr

2 Wireless Access--Anywhere, Anytime Broadband to the Home and Small Businesses Vast Increase in Internet End Points –Embedded Processors –Sensors and Actuators –Information Appliances A Core of Optical Fiber Carrying Parallel Light Waves Emergence of a Distributed Planetary Computer –Storage everywhere –Scalable computing power The Emerging Global Information Grid A Mobile Internet Powered by a Planetary Computer

3 Complex Problems Require a New Research and Education Framework www.calit2.net 220 UCSD & UCI Faculty Working in Multidisciplinary Teams With Students, Industry, and the Community

4 A Broad Partnership Response from the Private Sector Akamai Boeing Broadcom AMCC CAIMIS Compaq Conexant Copper Mountain Emulex Enterprise Partners VC Entropia Ericsson Global Photon IBM IdeaEdge Ventures Intersil Irvine Sensors Leap Wireless Litton Industries MedExpert Merck Microsoft Mission Ventures NCR Newport Corporation Orincon Panoram Technologies Printronix QUALCOMM Quantum R.W. Johnson Pharmaceutical RI SAIC SciFrame Seagate Storage Silicon Wave Sony STMicroelectronics Sun Microsystems TeraBurst Networks Texas Instruments UCSD Healthcare The Unwired Fund WebEx Computers Communications Software Sensors Biomedical Startups Venture Firms $140 M Match From Industry

5 Elements of the Cal -(IT) 2 Industrial Partnerships Endowed Chairs for Professors Start-Up Support for Young Faculty Graduate Student Fellowships Research and Academic Professionals Sponsored Research Programs Equipment Donations for Cal-(IT) 2 and Campus Named Laboratories in new Institute Buildings Pro Bono Services and Software

6 Wireless Pad Web Interface Developing the Grid Cyber Architecture To Support Medical Imaging Retrieval Duke UCLA Cal Tech Stanford U. Of MN Harvard NCRR Imaging and Computing Resources UCSD Cal-(IT) 2 SDSC Deep Web Surface Web Method-Form a National Scale Testbed for Federating Large Databases Using NIH High Field NMR Centers Source: Mark Ellisman, UCSD

7 Cellular Signaling Pathway Database, Analysis Tools and User Interface Shankar Subramaniam, UCSD, Director, Data Coordination & Bioinformatics Lab, Alliance for Cell Signaling

8 The Perfect Storm: Convergence of Engineering with BioMed, Physics, & IT 5 nanometers Human Rhinovirus IBM Quantum Corral Iron Atoms on Copper 400x Magnification From MEMS to Nanotech VCSELaser 500x Magnification 2 mm Nanogen MicroArray

9 As Our Bodies Move On-Line Bioengineering and Bioinformatics Merge New SensorsIsraeli Video Pill –Battery, Light, & Video Camera –Images Stored on Hip Device Next StepPutting You On-Line! –Key Metabolic and Physical Variables –Wireless Internet Transmission –Model -- Dozens of 25 Processors and 60 Sensors / Actuators Inside of our Cars Post-Genomic Individualized Medicine –Combine Your Genetic Code & Noninvasive Imaging Techniques, with Your Bodys Data Flow –Use Powerful AI Data Mining Techniques www.givenimaging.com

10 The UCSD Cal-(IT) 2 Building The Capstone of the Engineering Quad Occupancy 2004 220,000 Gross SF Integrate Cross-Cutting Teams SDSC / Faculty Joint Projects Nanofabrication Clean Rooms Telecommunications Laboratories Advanced Visualization Antenna Farm

11 From Telephone Conference Calls to Access Grid International Video Meetings Access Grid Lead-Argonne NSF STARTAP Lead-UICs Elec. Vis. Lab Linking Researchers with IP Multicast

12 ½ Mile Commodity Internet, Internet2 High-speed WAN (OC48+) Remote Wireless Data Ingestion Campus Wireless The UCSD Living Grid Laboratory Fiber, Wireless, Compute, Data, Software SIO SDSC CS Chem Med Eng. / Cal-(IT) 2 Hosp High-speed optical core 8 Gigabit now 80 Gigabit in 18 months 1 Terabit in 36 Months Source: Phil Papadopoulos, SDSC

13 Extending the Grid to Planetary Dimensions Using Distributed Computing and Storage AutoDock Application Software Has Been Downloaded to Over 12,000 PCs Nearly 1.5 Million CPU-Hours Computed In Silico Drug Design Art Olson, TSRI

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