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The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures Andreas Kohlbecker 1, Yde de Jong 2, Cherian Mathew 1, Lorna Morris.

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Presentation on theme: "The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures Andreas Kohlbecker 1, Yde de Jong 2, Cherian Mathew 1, Lorna Morris."— Presentation transcript:

1 The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures Andreas Kohlbecker 1, Yde de Jong 2, Cherian Mathew 1, Lorna Morris 1, Andreas Müller 1, Anton Güntsch 1, Walter Berendsohn 1 1 Botanic Garden and Botanical Museum Berlin-Dahlem, Department of Research and Biodiversity Informatics 2 Universiteit of Finland (Joensuu) & Royal Belgian Institute of Natural Sciences (Brussels)

2 The next 12 minutes Quick overview on the Edit Platform for Cybertaxonomy The Edit Platform as an information broker in selected projects  PESI, the Pan-European Species directories Infrastructure  ViBRANT  i4Life and BioVeL Q & A

3 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures EDIT Platform for Cybertaxonomy The EDIT Platform for Cybertaxonomy was initiated in the EU 6 th Framework project EDIT (European Distributed Institute of Taxonomy) An open platform of loosely coupled components Supports the full taxonomic workflow (data acquisition to publication) Support for individual as well as team work Improve and assure re-usability of data An info broker to integrate, pipeline and validate external data

4 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures A birds view on the plaform components

5 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures An Information broker DwC-A ABCD SDD External services CSV Custom imports Specimens & Observations Descriptive data Darwin Core Archive Import / Export REST Services Integrity Check ( Validation ) OAI-PMH Harvesting

6 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures PESI Pan-European Species directories Infrastructure Taxonomically integrates and secures the main pan-European species checklists First all-taxa inventory for European species ● enable correct use of species names and their classification ● more accurately manage information on animals and plants,... Index Fungorum Plants Fungi Marine organisms Animals

7 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures Import CDM-Store PESI Data Warehouse PESI Portal PESI - Technological platform Checklists :

8 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures PESI - Quality control mechanisms Import CDM-Store Checklist Maintainer PESI Data Warehouse PESI Portal Integrity Checker Report back integrity problems

9 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures ViBRANT : Interoperability of platforms ViBRANT Virtual Biodiversity A framework for managing biodiversity information on the Web biowikifarm JKI, Berlin NHM, London UPMC, Paris BGBM, Berlin A scalable data publish- ing framework with flexible data models

10 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures ViBRANT name search index ViBRANT Virtual Biodiversity EDIT Platform as a name search index & portal for exploring all Scratchpads data A single point of entry to all Scratchpad data

11 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures ViBRANT name search index DwC-A REST Services with humane frontend search scientific name search full text statistics Link back to source page

12 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures An information broaker for ViBRANT CSV XSLT XML biowikifarm search scientific name search full text statistics SDD DwC-A Wiki-Makup REST Services with humane frontend

13 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures Create a Virtual Research Community. Interlink and harmonise the taxonomic catalogues of six major Global biodiversity programmes with the Catalogue of Life gather and analyse data for digital experiments: a virtual e-laboratory Taxonomic backbone workflows Name Catalogue REST services (mimics GBIF Name Services)

14 TDWG 2013 - Andreas Kohlbecker The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures. A new service layer for the Catalogue of Life Name Catalogue REST Services scientific name search & fuzzy search scientific name information taxon information cyclically refreshed scientific names: name identifiers, taxon identifiers, etc. More information related to a name: rank, citation, status information related to a taxon: classification, synonymy, etc. streamlined, well documented and easy-to-use services Scientific workflow environments (Taverna & Kepler) ID DwC-A

15 Time for Q & A & Links EDIT Platform for Cybertaxonomy http://cybertaxonomy.eu/ Vibrant http://dev.e-taxonomy.eu/vibrant_index/search/vibrant_names.html http://species-id.net/wiki/ PESI http://www.eu-nomen.eu/pesi/ i4Life & BioVel http://www.i4life.eu/ http://www.biovel.eu/

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