1. Immunity & Disease

2. What is DNA?

3. What is DNA Day?

4. April 1953 Drs. James Watson and Francis Crick determined the structure of DNA (double helix)

5. April 2003 Human Genome Project determined the entire DNA sequence of a human (3 billion letters) What is DNA Day? April 1953 Drs. James Watson and Francis Crick determined the structure of DNA (double helix)

6. What is the Immune System?

7. The immune system protects the body from disease.

8. What is the Immune System? The immune system protects the body from disease. What is a pathogen? A macrophage engulfing bacteria

9. What is the Immune System? Examples: bacteria, viruses, fungi, and parasites An infectious organism that can cause disease. The immune system protects the body from disease. What is a pathogen? A macrophage engulfing bacteria

10. What is the Immune System? Examples: bacteria, viruses, fungi, and parasites An infectious organism that can cause disease. The immune system protects the body from disease. What is a pathogen? Are humans the only ones with an immune system? A macrophage engulfing bacteria

11. What is the Immune System? Examples: bacteria, viruses, fungi, and parasites No, other mammals, plants, fish, reptiles, and insects all have immune systems. An infectious organism that can cause disease. The immune system protects the body from disease. What is a pathogen? Are humans the only ones with an immune system? A macrophage engulfing bacteria

12. What happens when we get an infection? Our immune system destroys the pathogen in 2 ways

13. What happens when we get an infection? Our immune system destroys the pathogen in 2 ways 1. Cell-mediated response – involves our immune cells to destroy pathogens Macrophage Eat pathogens and debris Neutrophils Eat pathogens and kill by releasing toxic particles Examples:

14. What happens when we get an infection? 2. Humoral response – destroy pathogens using antibodies produced by B cells Our immune system destroys the pathogen in 2 ways

15. What happens when we get an infection? 2. Humoral response – destroy pathogens using antibodies produced by B cells What is an antibody? Our immune system destroys the pathogen in 2 ways

16. Information is stored in DNA RNA Synthesis (transcription) RNA copy Protein Synthesis (translation) Protein Amino acids Proteins do most of the work in a cell and provide much of its structure Antibodies are Proteins

17. Antibody Structure Heavy Chain Light Chain Variable Region: Part of the antibody that binds Pathogens Constant Region

18. What do Antibodies do? 1.Prevent pathogens from binding cells Bacteria

19. What do Antibodies do? Macrophage Neutrophil 2. Help other cells recognize pathogens so they can eat them up Bacteria

20. Questions… 1.Name some pathogens that can infect us and cause disease?

21. Questions… 1.Name some pathogens that can infect us and cause disease? 2.If there are several types of pathogens, do they all look similar or different?

22. Questions… 1.Name some pathogens that can infect us and cause disease? 2.If there are several types of pathogens, do they all look similar or different? 3.If there are several pathogens different from each other, how do our antibodies recognize and bind all of them?

23. Immunity Demonstration

24. There are LOTS of different pathogens. How does our immune system recognize them all?

25. B cells are the cells of the immune system that make antibodies Remember….

26. Each B cell produces a unique antibody that recognizes a specific piece of foreign material (e.g., pathogen) The different antibodies are unique from each other by having different variable regions! Pathogens Antibodies B cells

27. How do B cells produce different variable regions of antibodies? Our B cells can make 10 11 different antibodies. How many is this?

28. How do B cells produce different variable regions of antibodies? Our B cells can make 10 11 different antibodies. 100,000,000,000 How many is this?

29. Could it be that in our DNA we have a gene for each of these 10 11 antibodies? The entire human genome contains about 30,000 genes

30. Could it be that in our DNA we have a gene for each of these 10 11 antibodies? The entire human genome contains about 30,000 genes 30,000 <<< 100,000,000,000 (30,000 is much less than 100,000,000,000)

31. Gene AGene BGene CGene D Gene AGene BGene CGene D Gene AGene BGene CGene D Every cell in your body has the exact same genetic information encoded in your DNA Skin cell B cell Nerve cell

32. Gene AGene BGene CGene D Gene AGene BGene CGene D However, different cells have different genes turned on or off OFF ON Gene AGene BGene CGene D OFF ON Skin cell B cell Nerve cell

33. How do B cells produce different variable regions of antibodies? In the DNA of B cells, specific antibody genes are turned on. Part of the answer is that…. Gene AGene BGene CGene D OFF ON

34. How do B cells produce different variable regions of antibodies?

35. We are able to make so many different antibodies due to another phenomenon called VDJ Recombination

36. How do B cells produce different variable regions of antibodies? We are able to make so many different antibodies due to another phenomenon called VDJ Recombination VDJ recombination is the process by which V, D, and J genes are randomly selected and combined to form the heavy and light chains that make antibodies.

37. How do B cells produce different variable regions of antibodies? We are able to make so many different antibodies due to another phenomenon called VDJ Recombination VDJ recombination is the process by which V, D, and J genes are randomly selected and combined to form the heavy and light chains that make antibodies. VDJ recombination is specific to certain cells of the immune system and does not occur in other cells of our body.

38. o Antibodies are made up of 2 light chain proteins and 2 heavy chain proteins. Genes that encode antibody proteins are found in DNA

39. V D J V J o Antibodies are made up of 2 light chain proteins and 2 heavy chain proteins. o The genes that encode these proteins are found in your DNA. These are referred to as V, D, and J genes. V V D J J Genes that encode antibody proteins are found in DNA

40. There are 45 V, 27 D, and 6 J genes in the heavy chain DNA sequence

41. Through VDJ recombination, the cell randomly chooses 1 V, 1 D, and 1 J gene to make the heavy chain V34 V35 V36 V37 V38 V39 V7V8V9V10V11V12V13V14V15V16 V17 V40 D1 D2 D3 D4 D5 D6 D7 D20 D21 D22 D21 D23 D24 D25 D22 In this example, the heavy chain DNA randomly recombines to join the V36 and the D5 genes.

42. V34 V35 V36 V7V8V9V10V11V12V13V14V15V16 V17 V37 V38 V39 V40 D1 D2 D3 D4 D5 D6 D7 D20 D21 D22 D21 D23 D24 D25 D22 The cell randomly chooses 1 V, 1 D, and 1 J gene to make the heavy chain In this example, the heavy chain DNA randomly recombines to join the V36 and the D5 genes.

43. V34 V35 V36 V7V8V9V10V11V12V13V14V15V16 V17 D5 Then, the heavy chain DNA randomly recombines to join the D5 and J3 genes. The cell randomly chooses 1 V, 1 D, and 1 J gene to make the heavy chain J3

44. V34 V35 V36 V7V8V9V10V11V12V13V14V15V16 V17 D5 The cell randomly chooses 1 V, 1 D, and 1 J gene to make the heavy chain J3 Then, the heavy chain DNA randomly recombines to join the D5 and J3 genes.

45. DNA → RNA → Protein Heavy chain DNA Heavy chain mRNA Heavy chain protein Transcription Translation V36 Only the V36, D5 and J3 genes are turned ON. The remaining heavy chain genes are turned OFF.

46. Heavy and light chain proteins are translated Antibodies made and assembled in B-cells

47. Heavy and light chain proteins are translated Heavy and light chain proteins are assembled into antibodies within the cytoplasm Antibodies made and assembled in B-cells

48. Heavy and light chain proteins are translated Heavy and light chain proteins are assembled into antibodies within the cytoplasm Antibodies are exported to the cell surface where they can recognize pathogens Antibodies made and assembled in B-cells

49. The inability of immune cells to perform VDJ recombination has very serious consequences! Individuals with a defect in VDJ recombination, lack diversity in their antibody production, and as a result have severely weakened immune systems (immunodeficiency) http://en.wikipedia.org/wiki./The_Boy_in_the_Plastic_Bubble

50. Helper T Cell B Cell virus Once a B cell recognizes a pathogen, how does it trigger an immune response? This activation leads to the release of antibodies and clonal expansion. Activation

51. l Please PAUSE and take a moment to play the VDJ recombination BINGO game!

52. Below is the DNA sequence of genes that encode the heavy and light chains of an antibody before VDJ recombination has occurred. (For the purposes of the class activity we are only dealing with 6 genes in each region.) Heavy chain sequence located on chromosome 14: Light chain sequence located on chromosome 2: Roll the dice to determine which V, D, and J genes will be used to generate the specific antibody for each B-cell: Heavy chain: V=__ D=__ J=__ Light chain: V=__ J=__ B-Cell 1 Heavy chain: V=__ D=__ J=__ Light chain: V=__ J=__ B-Cell 2 Heavy chain: V=__ D=__ J=__ Light chain: V=__ J=__ B-Cell 3 Heavy chain: V=__ D=__ J=__ Light chain: V=__ J=__ B-Cell 4 Now, fill in the V, D, and J segments of the antibody that each B-cell expresses on the BINGO worksheet. Use a pen. Pencil or marker to color a segment of the light or heavy chain when it is called. When you have covered an entire antibody. Yell BINGO!

53. B-Cell Antibody BINGO (each students gets 2 sheets i.e 4 antibodies)

54. One B cell isn’t going to release enough antibody on its own to fight a pathogen. So it makes clones of itself. A clone is an exact genetic copy of another cell.

55. 1000 B cells that recognize the pathogen 4-5 days An activated B cell that has come in contact with its corresponding pathogen and helper T cell will go through clonal expansion. Clonal expansion

56. Immunity Demonstration

57. Memory B Cells After clonal expansion, some B cells turn into memory B cells. These cells will remain in your body for years, ready to respond immediately if you encounter that pathogen again.

58. Memory B Cells Memory B cells protect us from future infections… Can we take advantage of memory B cells to prevent ourselves from getting sick?

59. Vaccines help our bodies create memory B cells without making us sick Image from: http://passporthealthnewyork.blogspot.com

60. How do vaccines work? Vaccines contain non-infectious versions of a pathogen: Subunit vaccines Killed vaccines Modified live vaccines

61. How do vaccines work? Vaccines contain non-infectious versions of a pathogen: Subunit vaccines Killed vaccines Modified live vaccines These incomplete or weakened versions won’t make us sick, but our body will still mount an immune response against them, creating memory B cells in the process.

62. Name some diseases we are vaccinated against?

63. Why do we have to get the flu vaccine every year?

64. H1N1 Influenza Virus Neumann et al. Nature 2009

65. What did we learn today?

66. Antibodies are proteins created by B cells that bind to pathogens, a key step in our immune response.

67. What did we learn today? Antibodies are proteins created by B cells that bind to pathogens, a key step in our immune response. We are able to create a large variety of antibodies using VDJ Recombination and turning genes on and off.

68. What did we learn today? Antibodies are proteins created by B cells that bind to pathogens, a key step in our immune response. We are able to create a large variety of antibodies using VDJ Recombination and turning genes on and off. B cells mount an immune response by undergoing clonal expansion.

69. What did we learn today? Antibodies are proteins created by B cells that bind to pathogens, a key step in our immune response. We are able to create a large variety of antibodies using VDJ Recombination and turning genes on and off. B cells mount an immune response by undergoing clonal expansion. We are protected from future infections by memory B cells.

70. What did we learn today? Antibodies are proteins created by B cells that bind to pathogens, a key step in our immune response. We are able to create a large variety of antibodies using VDJ Recombination and turning genes on and off. B cells mount an immune response by undergoing clonal expansion. We are protected from future infections by memory B cells. Vaccines are a method of creating memory B cells without causing illness.

71. What do I study? Why do I love science? Questions? About the Scientist:

72. Register for the 2 nd Annual DNA Day 5K! ncdnaday.org/5K Run to Support Science Outreach and Education in NC 9:00 AM | Saturday, May 17th 2014 Run Through UNC Chapel Hill’s Campus

73. ncdnaday.org/festival Join us for the 2nd annual NC DNA Day Science Festival after the 5K to do more fun hands-on science experiments! May 17, 2014 UNC Student Union Great Hall 10am-12pm Experiments Games Raffles Activities Contests More!