1. Update in GDR, The Genome Database for Rosaceae S Jung, T Lee, S Ficklin, CH Cheng, I Cho, P Zheng, K Evans, C Peace, N Oraguzie, A Abbott, D Layne, M Olmstead, F Gmitter, C Chen, L Mueller and D Main

2. Topics New Data in GDR The whole genome sequence and annotation of strawberry, in addition to peach and apple Large-scale phenotyping and genotyping data from RosBreed are now available through Breeders Toolbox in GDR. SNP markers included in the apple 9K, peach 9K and cherry 6K illumina SNP arrays, as well as all candidates SNPs. QTL data and more genetic map and polymorphism data New Functionality Breeders Toolbox has been updated to include more search sites and analysis tools for breeders to access their private data that is integrated with public GDR data. GBrowse_Syn to display syntenic regions QTL search site

3. Go Live

7. Search Tools

8. Marker Details

9. Search for syntenic regions in strawberry using Gbrowse_Syn

11. A secure site where breeders can access their private data (pedigree, phenotyping and genotyping) and analyze them in combination with other public GDR data through an advanced search interface. Now available for RosBREED public breeding data Functionality –Search by dataset, variety, trait, parentage, marker, allele –Online tools for breeders - generating inputs for breeding software and crossing decision tool Breeders Toolbox

13. 13 Browse Datasets

14. Phenotyping Data Search 14

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16. Variety Detail Page

17. Genotyping Data Search 17

18. Tools – Generate Input files for Pedimap, a breeding software

19. CrossAssist: Generates a list of parents and the number of seedlings to get the progeny with desired traits

20. Acknowledgements Project coPIs- Dorrie Main (PI), Bert Abbott, Cameron Peace, Kate Evans, Des Layne, Nnadozie Oraguzie, Mercy Olmstead, Fred Gmitter, the RosBREED and Cacao teams Rosaceae, Citrus, Cacao and Bioinformatics Community USDA NIFA SCRI, NSF Plant Genome Program, MARS, USDA- ARS, Washington Tree Fruit Research Commission, WSU, Clemson University, University of Florida, Boyce Thompson Institute