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Jennifer Thomas Division of Entomology University of Kansas.

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Presentation on theme: "Jennifer Thomas Division of Entomology University of Kansas."— Presentation transcript:

1 Jennifer Thomas Division of Entomology University of Kansas

2  Over 10 major releases in 17 years with extensive upgrades and new features.  Supported by the U.S. National Science Foundation since 1987.  Staff of 8 people attending to programming, development, conversions, web, DiGIR and user issues.

3 Norway Ecuador Colombia (3) Guatemala (2) Mexico Canada (2) Portugal UK (2) Denmark NewZealand Germany (6) Poland Hungary South Africa (3) Kenya Malaysia Brazil (9) Venezuela Chile (3) India Peru  Representation of all Natural History disciplines  Over 375 collections in 26 countries  Over 140 US institutions in 43 states  Over 10 million specimens cataloged  Increasing all the time Spain Australia (6)

4  Brief History of the SEMC database  Capturing historical specimen data with associated label image  Proactive capture – straight from the field  Specify 6 Georeferencing tools  Sharing data  Specify 6 museum management tools  Acknowledgements

5  Started in FoxPro – 1998  Migrated to Specify – NSF North American/Mexican bee project  Duplication of collecting events, localities, collectors  2008 – EPSCoR funds to capture SEMC Orthoptera  Launched first effort to clean up/standardize the database  Smallest Table = Agents (~3000 Collectors/Determiners)  Collection Event table – most duplication here  Solution = Retroactive Collecting Event #s  SK.PadrZ1959.07.23 001  NSF – A specimen-level database of the world’s bees (Apoidea) at the University of Kansas

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7  Brief History of the SEMC database  Capturing historical specimen data with associated label image  Proactive capture – straight from the field  Specify 6 Georeferencing tools  Web-access  Specify 6 museum management tools  The future of Specify 6 for Entomology

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9  Within each species, specimens are arranged by collecting event:  Collector  Date  Locality  Elevation, host plant, habitat data…  Then barcodes are attached in that order.

10 SK.PadrZ1959.07.23 001

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13  Brief History of the SEMC database  Capturing historical specimen data with associated label image  Proactive capture – straight from the field  Specify 6 Georeferencing tools  Web-access  Specify 6 museum management tools  The future of Specify 6 for Entomology

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15  Brief History of the SEMC database  Capturing historical specimen data with associated label image  Proactive capture – straight from the field  Specify 6 Georeferencing tools  Web-access  Specify 6 museum management tools  The future of Specify 6 for Entomology

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17  Brief History of the SEMC database  Capturing historical specimen data with associated label image  Proactive capture – straight from the field  Specify 6 Georeferencing tools  Sharing Data  Specify 6 museum management tools  The future of Specify 6 for Entomology

18 KU Biodiversity Institute choose to leverage the GBIF-developed IPT  Ease of mapping Darwin Core concepts  Ease of mobilizing data through IPT to GBIF http://www.gbif.org/informatics/primary-data/publishing/

19  Specify - DC schema selection  Specify - query mapping  Specify - export tool

20  Thematic portals  InvertNet  MaNIS: http://www.manisnet.org http://www.manisnet.org  HerpNET: http://www.herpnet.org http://www.herpnet.org  ORNIS: http://www.ornisnet.org http://www.ornisnet.org  FishNet2: http://www.fishnet2.net http://www.fishnet2.net  GBIF data portal  http://portal.gbif.org  Available 4-6 weeks after initial publication

21  Brief History of the SEMC database  Capturing historical specimen data with associated label image  Proactive capture – straight from the field  Specify 6 Georeferencing tools  Web-access  Specify 6 museum management tools and security features  Acknowledgements

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23  We’ll continue to work with the Specify team to customize our database.  Functionality to allow all types of barcodes  Batch-editing tools like we had in Specify 5  Form customizer  Web interface

24  Dr. Michael Engel, Dr. Zack Falin  Our CA’s - Crystal Maier & Mabel Alvarado  Our Undergrads – Erin, Alexa, Shayna, and Dan  The Specify Team – Andy Bentley, Theresa Miller, Tim Noble, Rod Spears, & Jim Beach.  Laura Russell – KU Informatics programmer, and GBIF extraordinaire  NSF DBI – 1057366: A specimen-level database of the world’s bees (Apoidea) at the University of Kansas PI – Dr. Michael Engel

25  Written in Java  PC, Mac and LINUX compatible  Database agnostic – MySQL  Open source – all source code available under FOSS (GPL2)

26  Collections management platform – pluggable components  Multi-collection/discipline capable  3 rd party applications - GEOLocate, Google Earth  Web services and online providers – ITIS, Fishbase, Lifemapper  Strategic Partnerships – Filtered push (Harvard), botanical OCR (Michigan), image bank (MorphBank) and DNA (BCoL)  Staged, frequent releases with added functionality – smart update

27  Many other systems out there – KeEmu, Past Perfect, Index Kentukiensis, Collections Space, Mantis, Multi-Mimsy etc.  All have limitations or cost prohibitions for small to medium sized museums  Cost  Flexibility and customization  All disciplines *  Open source – community driven  Wealth of features  Support and longevity


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