1. Biological Databases Morten Nielsen BioSys, DTU

2. Different kinds of data DNA –NCBI GenBankNCBI GenBank –Organism specific databases Protein –UniProt SwissProt TrEMBL –NCBINCBI

3. Different kinds of data Protein Structure –PDBPDB Expression Data –NCBI GeoNCBI Geo Epitopes –IEDBIEDB

4. PDB

5. IEDB Immune Epitope Database: http://www.immuneepitope.org/

6. UniProt UniProt database http://www.uniprot.org/

7. Data redundancy! Databases have non-biological redundancy This is problematic when training data- driven prediction methods –As you saw for PSSM construction Uniprot has a feature to remove redundancy (90% or 50%). How is this done? This and much more you will find out in the next episode of...