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EXPASY TOOLS. 2  The ExPASy (the Expert Protein Analysis System) World Wide Web server (  Provides access to scientific databases.

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Presentation on theme: "EXPASY TOOLS. 2  The ExPASy (the Expert Protein Analysis System) World Wide Web server (  Provides access to scientific databases."— Presentation transcript:

1 EXPASY TOOLS

2 2  The ExPASy (the Expert Protein Analysis System) World Wide Web server (http://www.expasy.org)  Provides access to scientific databases and software tools (i.e., resources) in different areas of life

3 3

4 4

5 ELM

6 6 Purpose Mainly focuses on annotation and detection of eukaryotic linear motifs (ELMs)

7 7 I NPUT Protein sequence Enter Uniprot identifier or accession number: (auto-completion) e.g. EPN1_HUMAN, P04637, TAU_HUM ANEPN1_HUMANP04637TAU_HUM AN

8 8 REESULT INTERPERTATION

9 PROTPARM

10 10 Purpose: ProtParam computed parameters include the molecular weight, theoretical pI, amino acid composition, atomic composition, instability index, aliphatic index and grand average of hydropathicity.

11 11 I NPUT Protein sequence File from laptop

12 RESULT INTERPRETATION 12

13 RESULTS 13

14 RESULT INTERPRETION 14

15 15

16 RESULT INTERPRETITION 16

17 RESULT INTERPERTATION 17

18 RESULT INTERPERTATION 18

19 19 RESULT INTERPERTATION

20 20

21 21

22 SulfoSite

23 Place your screenshot here 23 Purpose: SulfoSite is to computationally predict sulfation sites within given protein sequences. A representative set of 162 protein tyrosine sufation sites from the Swiss-Port were used to analyze characteristics and to train and test in SulfoSite

24 24 I NPUT Protein sequences Directly Attached file from computer

25 25 REESULT INTERPERTATION

26 Compute pI/Mw tool

27 Place your screenshot here 27 Purpose: Compute pI/Mw is a tool which allows the computation of the theoretical pI (isoelectric point) and Mw (molecular weight) for a list of UniProt Knowledgebase (Swiss- Prot or TrEMBL) entries or for user entered sequences.

28 28 I NPUT UniProtKB/Swiss-Prot protein identifiers (ID) Protein sequence in single letter code. Upload a file from your computer

29 29 REESULT INTERPERTATION

30 30 REESULT INTERPERTATION

31 31 REESULT INTERPERTATION

32 Translate tool

33 Place your screenshot here 33 Purpose: Translate is a tool which allows the translation of a nucleotide (DNA/RNA) sequence to a protein sequence.

34 34 I NPUT Enter a DNA or RNA sequence.

35 35 REESULT INTERPERTATION

36 36

37 37 THANKS! Any questions? You can find me at zahrashahzadi1134@gmail.com


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