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Job submission and automated installation of ARC grid Runtime Environments.

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Presentation on theme: "Job submission and automated installation of ARC grid Runtime Environments."— Presentation transcript:

1 Job submission and automated installation of ARC grid Runtime Environments

2 Legend User shell input Observation in Janitor log file

3 Create proxy certificate grid-proxy-init Your identity: /O=GermanGrid/OU=UniLuebeck/CN=Daniel Bayer Enter GRID pass phrase for this identity: Creating proxy........................................ Done Your proxy is valid until: Wed Nov 7 04:43:02 2007

4 Job submission $ ngsub -c grid-dev.inb.uni-luebeck.de test.xrsl Job wurde submitted mit Job ID: gsiftp://grid-dev.inb.uni-luebeck.de: 2811/jobs/311481194365031439244889 & (executable = "run.sh" ) (arguments = "weka.classifiers.trees.J48" "-t" "weather.arff") ("inputfiles" = ("weather.arff" "" )) ("stderr" = "stderr" ) ("stdout" = "stdout" ) ("gmlog" = "gmlog" ) ("runtimeenvironment" = "APPS/BIO/WEKA-3.4.10")

5 Submitting job: job registration registering new job (APPS/BIO/WEKA-3.4.10) sucessfully registered job

6 Preparing Job: dependency download use basesystem "debian::etch_tar" for dynamically installed rte installing package http://dre.knowarc.eu:8080/dre/jre_1.5.0.10-1.tar.gz

7 Preparing Job: dependency installation Installing /tmp/jre_1_bNCeM5PY_.5.0.10-1.tar.gz Successfully installed "/tmp/jre_1_bNCeM5PY_.5.0.10-1.tar.gz" in "/grid/runtime/janitor- dev/jre__MbMiNikwGG"

8 Preparing job: package installation installing package http://dre.knowarc.eu:8080/dre/weka-3.4.10.tar.gzhttp://dre.knowarc.eu:8080/dre/weka-3.4.10.tar.gz Installing /tmp/weka-3_w7LN4t1x_.4.10.tar.gz Successfully installed "/tmp/weka-3_w7LN4t1x_.4.10.tar.gz" in "/grid/runtime/janitor- dev/weka_5onnE2YOhH"

9 Preparing job: initialisaition completed sucessfully initialized job

10 Jobs are registered to REs perl Janitor.pl info Registered Jobs: * 311481194365031439244889 - rte: APPS/BIO/WEKA-3.4.10 - state: INITIALIZED - age: 5 seconds Locally Installed RTEs: * APPS/BIO/LAGAN-1.2 * APPS/BIO/TFBS-0.5.0 * APPS/BIO/TCOFFEE-2.5 * APPS/STATISTICS/R-2.4.1 Known Dynamic RTEs: * APPS/BIO/WEKA-3.4.10 - state: INSTALLED_A - used: 311481194365031439244889

11 Communicating to Information System connection from 127.0.0.1:58816

12 Finishing: Unassign job from RE removing job 3168211943652401030747187 3168211943652401030747187: removed

13 User's interest: RE state $ perl Janitor.pl info Registered Jobs: Locally Installed RTEs: * APPS/BIO/LAGAN-1.2 * APPS/BIO/TFBS-0.5.0 * APPS/BIO/TCOFFEE-2.5 * APPS/STATISTICS/R-2.4.1 Known Dynamic RTEs: * APPS/BIO/WEKA-3.4.10 - state: INSTALLED_A

14 User: Collect data ngget -a Ergebnisse werden abgelegt unter /nfshome/bayer/arbeit/svn/grid/weka/3.4.10/test/ 3168211943652401030747187 Jobs bearbeitet: 1, erfolgreich heruntergeladen: 1

15 Job successful: dynamic RE validation perl Janitor.pl setstate VALIDATED APPS/BIO/WEKA-3.4.10

16 Job successful: dynamic RE validated $ perl Janitor.pl info Registered Jobs: Locally Installed RTEs: * APPS/BIO/LAGAN-1.2 * APPS/BIO/TFBS-0.5.0 * APPS/BIO/TCOFFEE-2.5 * APPS/STATISTICS/R-2.4.1 Known Dynamic RTEs: * APPS/BIO/WEKA-3.4.10 - state: VALIDATED

17 Clean up $ perl Janitor.pl setstate REMOVAL_PENDING APPS/BIO/WEKA-3.4.10

18 Clean up $ perl Janitor.pl info Registered Jobs: Locally Installed RTEs: * APPS/BIO/LAGAN-1.2 * APPS/BIO/TFBS-0.5.0 * APPS/BIO/TCOFFEE-2.5 * APPS/STATISTICS/R-2.4.1 Known Dynamic RTEs: * APPS/BIO/WEKA-3.4.10 - state: REMOVAL_PENDING $ perl Janitor.pl sweep


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