1. LONI Pipeline Integration/ UNC shape analysis
2007 Project Half Week
LONI Pipeline Integration/ UNC shape analysis
Team
Plan/Expected Challenges/Publication
Algorithms, Software Development:
Create a workflow in LONI pipeline that wraps around a new set of UNC shape analysis executables. Develop, provide interface for executing the workflow on the LONI grid. Continuation of last programming week.
Discuss Slicer3 integration, eg: Pipeline v4 batch mode operation .
Jagadeeswaran Rajendiran, UCLA (Core 2)
Martin Styner, UNC (Algorithms)
Steve Pieper, Isomics (Core 2)
Software: computational speed. Intuitive user interface.
Accomplished by end of Programming Week
Clinical: Validation of results.
Pipeline batch mode completed, workflows can be executed without GUI
Capability to execute both locally (on your laptop) and on the grid completed
Worked on client-server, testing for scalability in progress
Worked with Martin, discussed possible enhancements to the data model
Pipeline available for alpha-testing

2. LONI pipeline for UNC shape analysis: Developing LONI pipelines for UNC shape analysis ready for clinicians
Team
Plan/Expected Challenges/Publication
Algorithms: create LONI pipeline modules and network for new set of shape analysis executables, as well as interface for running UNC shape analysis in LONI as simple as possible. Continuation of last programming week.
Martin Styner, UNC
Michael Pan, LONI
Jagadeeswaran Rajendiran, LONI
Software: Training, Extension of LONI software if needed.
Clinical: Validation of results.
Accomplished by end of Programming Week
LONI pipeline for full processing created
Bug fixing and considerable feature request issued
Top-level view encapsulating details from users
Nearly ready for Core 3 and training core
Open Issues: Full encapsulation, job distribution,
Visualization of Quality Control data and results,
Validation of Results