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Conserved Domain Database and Cn3D

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1 Conserved Domain Database and Cn3D
WSSP Chapter 12 Conserved Domain Database and Cn3D atttaccgtg ttggattgaa attatcttgc atgagccagc tgatgagtat gatacagttt tccgtattaa taacgaacgg ccggaaatag gatcccgatc atgattgctt caatattttc acttcaatga ttggttctaa gcattcgaat gcgtacccgt ttgattaata tttccatttc tgtcccagtt tttaattttc atttcttttg gttaaaaaat tcccagtctc ttgaatgctt ttctaaaatc tttaattcaa ttatttatta gaatcttctg ttttgagaac tttgtaatgt aattaaataa tttgatgaaa tgattatgaa tgcgaataaa ttattaattt accgtgctga ttggattgaa attatcttgc atgagccagc tgatgagtat gatacagttt tccgtattaa taacgaacgg ccggaaatag gatcccgatc atgattgctt caatattttc acttcaatga ttggttctaa gcattcgaat gcgtacccgt ttgattaata tttccatttc tgtcccagtt tttaattttc atttcttttg gttaaaaaat tcccagtctc ttgaatgctt ttctaaaatc tttaattcaa ttatttatta gaatcttctg ttttgagaac tttgtaatgt aattaaataa tttgatgaaa tgattatgaa tgcgaataaa ttattaattt accgtgttgg attgaaggta attatcttgc atgagccagc tgatgagtat gatacagttt

2 Protein Structure Analysis Questions in DSAP (Q3-Q5)
© 2014 WSSP

3 BLASTP search with EX1.14 p. 12-2 © 2014 WSSP

4 Conserved domains in proteins
© 2014 WSSP

5 Conserved Domain Database (CDD) report
© 2014 WSSP

6 Dynein light chain domain families
With structure Without structure © 2014 WSSP

7 Dynein light chain domain family (with structure)
p. 12-3 © 2014 WSSP

8 Links to structure files
p. 12-3 © 2014 WSSP

9 Cn3D of 1YO3R_C structure Graphic window Annotation window
Alignment window p. 12-4 © 2014 WSSP

10 Highlight residues in the protein
© 2014 WSSP

11 Worm view of alpha helices and beta strands
© 2014 WSSP

12 Spacefill of residues. p. 12-6 © 2014 WSSP

13 Space view of another protein in CPK coloring
(Not in text) © 2014 WSSP

14 Annotations p. 12-6 © 2014 WSSP

15 View multiple proteins in a complex
© 2014 WSSP

16 Enter in findings into DSAP Analysis page
© 2014 WSSP

17 Finding the information for DSAP
© 2014 WSSP

18 Use the secondary structure view of the protein to count helices and strands
© 2014 WSSP


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