1. Conserved Domain Database and Cn3D
WSSP Chapter 12
Conserved Domain Database and Cn3D
atttaccgtg ttggattgaa attatcttgc atgagccagc tgatgagtat gatacagttt tccgtattaa taacgaacgg ccggaaatag gatcccgatc atgattgctt caatattttc acttcaatga ttggttctaa gcattcgaat gcgtacccgt ttgattaata tttccatttc tgtcccagtt tttaattttc atttcttttg gttaaaaaat tcccagtctc ttgaatgctt ttctaaaatc tttaattcaa ttatttatta gaatcttctg ttttgagaac tttgtaatgt aattaaataa tttgatgaaa tgattatgaa tgcgaataaa ttattaattt accgtgctga ttggattgaa attatcttgc atgagccagc tgatgagtat gatacagttt tccgtattaa taacgaacgg ccggaaatag gatcccgatc atgattgctt caatattttc acttcaatga ttggttctaa gcattcgaat gcgtacccgt ttgattaata tttccatttc tgtcccagtt tttaattttc atttcttttg gttaaaaaat tcccagtctc ttgaatgctt ttctaaaatc tttaattcaa ttatttatta gaatcttctg ttttgagaac tttgtaatgt aattaaataa tttgatgaaa tgattatgaa tgcgaataaa ttattaattt accgtgttgg attgaaggta attatcttgc atgagccagc tgatgagtat gatacagttt

2. Protein Structure Analysis Questions in DSAP (Q3-Q5)
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3. BLASTP search with EX1.14
p. 12-2
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4. Conserved domains in proteins
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5. Conserved Domain Database (CDD) report
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6. Dynein light chain domain families
With structure
Without structure
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7. Dynein light chain domain family (with structure)
p. 12-3
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8. Links to structure files
p. 12-3
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9. Cn3D of 1YO3R_C structure Graphic window Annotation window
Alignment window
p. 12-4
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10. Highlight residues in the protein
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11. Worm view of alpha helices and beta strands
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12. Spacefill of residues.
p. 12-6
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13. Space view of another protein in CPK coloring
(Not in text)
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14. Annotations
p. 12-6
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15. View multiple proteins in a complex
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16. Enter in findings into DSAP Analysis page
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17. Finding the information for DSAP
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18. Use the secondary structure view of the protein to count helices and strands
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