1. Genome Database for Rosaceae:
resource for genomic, genetic and breeding research
Sook Jung, Taein Lee, Chun-Huai Cheng, Katheryn Bubble, Ping Zheng, Jing Yu, Jodi Humann, Ksenija Gasic, Kristin Scott, Morgan Frank, Sushan Ru, Heidi Hough, Kate Evans, Cameron Peace, Lisa DeVetter, Jim McFerson, Michael Coe, Dorrie Main

2. Content
Vision
Data and Functionality of GDR (focusing on the new features)
Future plans

3. Vision of GDR as a Community Database
To provide centralized access to data for basic, translational and applied researchers
To provide data mining opportunities via intuitive online tools
To provide data sharing and communication opportunities

4. GDR Data 21 Genome assemblies 528,890 Genes 585,574 mRNAs 287
Genetic Maps
3,249,946
Markers
3,772
QTLs and MTLs
14,382
Germplasm
10,511,195
Genotypes
876,885
Phenotypes
7,404
Publications

5. GDR Homepage

6. JBrowse

7. Jbrowse (multiple gene annotations)

8. Jbrowse (multivariant viewer)

9. New Synteny Viewer

10. New Synteny Viewer

12. GDR Search Interfaces

13. Search and Download
Sort results by clicking header

14. Customizing output in Gene Search

15. SNP Genotype Search Download only polymorphic results
Next level dropdown is dynamically generated

16. Map Viewer

17. Map Viewer (zoom and link to marker page)

18. Map Viewer Control Pannel: choose maps for comparison
Change display settings

19. Map Viewer (compare maps)

20. BIMS (Breeding Information Management System)
To search and download publicly available breeding data
To provide individual breeders with a secure and comprehensive online breeding management system which allows them to:
Store, manage, archive and analyze their private breeding program data
Manage data from the Field Book App, an android app for collecting phenotype data in the field
To use BIMS for your private breeding program, create a GDR account and ask us for a breeder privilege.

21. Manage Breeding – Manage Program
In manage program section, you can edit information on your program and also add members and give them privilege to read or read and write.
Add members and give them privilege to read or read/write

22. Data Import – Upload data from Templates
In data upload, files can be uploaded. The status of the upload is shown. The history of files uploaded is being added with submission details.

23. Search Accession
Search accessions by any combination of properties and trait values and save/download

24. Comparison between datasets
Choose datasets to compare trait data

25. Future Development Continue to integrate genomic/genetic/breeding data
Site-wide search
Bio-Mart type search/download tools
Further development of BIMS
All these are being developed as Tripal Modules
Current Mainlab modules (template/loader, data display, search modules) have been released

26. The Team
Finally, I’d like to thank the organizations listed here for providing funding to support CottonGen.
If you have any questions or suggestions, please don’t hesitate to use the contact form on the website to contact us or catch us in person during the conference
Any Questions?

27. Funding and Acknowledgement

28. Thank you!